K26516

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26516

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26516

Determination of introduced cDNA(s)

  • J023057O22 - Rice Full-length cDNAs - Original: J023057O22

    full reading [+] show sequence

    Nucleotide sequence: J023057O22 - full reading 
    ACCAAACACA GACAGAGCAA TGAGCAACAT TGAGTCTTCT CCTGAAGGGT 
    TTAATATGCT CCGACGCATG TATGAAACTG TCCAGGAGCC TTTCCTAAAT 
    GCGACAACAA TGGGTGGAGA AGGCAACACA GCTCCAAACC CATTCTCAGC 
    TCTTCTTGGA AATCAGGGTT CTAACCAACC AAGGGATCCT GCTACAAATG 
    CTCCAAATAC TGGCTCAGAG TCTACAACAG GAACCCCTGC TCCAAACACT 
    AATCCACTTC CAAATCCTTG GAGCTCCAAT GCTGGAGGTG CGCAAGGAGC 
    AACACGGGCA GGTTCTACTG GCAATGCAAG AACCGGGGCC ACTGGGGGCC 
    TTGGAGGGTT GGGGTCAGCT GATCTGAGCA GTTTATTTGG TGGTCTTGCC 
    GGTAATACAG GAACTGGTGC TACTGGTGGT CTAGGAGGGT TGGGTTCAGC 
    AGATTTGGGA AGTTTGCTTG GTGGTTCTCC TGATTCTTCT TCCTTGAGCC 
    AGATTTTGCA AAACCCTGTT ATGATGCAGA TGATGCAGAA TATCATGTCT 
    GATCCACAGT CCATGAACCA GTTGCTTAAC TTCAACCCAA ATACACGCAA 
    CCTCATGGAA TCAAACACTC AGTTGAGGGA AATGTTCCAA AATCCAGAAT 
    TTATTCGCCA GCTTACATCC CCAGAAACTA TGCAGCAATT ACTCTCGTTC 
    CAGCAGACAT TATTATCACA GCTTGGTCAA AATCAACCTA GGCAGGATGG 
    TAGCCAAGGA GGCAATGCGA CAGGCATGCG GGGAAATGTT AGCCTCGACA 
    CCTTGATGGG CATGCTTAGT GGGCTTGGTG CTGGAGGTGG CATAGGTGTA 
    CCCAATACAT CCAATGTTCC ACCGGAAGAA CTGTATGCAA CACAGCTCAC 
    TCAGCTCCGA GAGATGGGTT TCATCGACAC TGCAGAGAAC ATCCAGGCGC 
    TAGTCGCAAC TGCTGGGAAT GTGAATGCTG CGGTGGAGCG TCTTCTTGGC 
    AATCTTGGCC AGTAGCTAAA GCGTACCAGA CGCTGCCCAT AACGTCACCA 
    ACTCCGCTCT TTTGCAAGAG GTTTTTTAGC CCCTCCAAGT TCAAACGCAG 
    CGTCTGTCTA CAGTCTCAGG AGAAAATAAA ACAAAGAAAT CCCACCCCCA 
    CCATTAACTT TTCCATACAT GGTCGTCATG CCTTTGTTTT TACCGTGTTG 
    TATTTGACTA TTTGGGTTGA TGTACATACA TATGAAATTA TCGGATCTTA 
    CCGCATAGAA TATGGGTCTA CCTTTGC

    Gene models with high sequence identity

    1. AT2G17200.1 [+] show detail - ubiquitin family protein
      E-value: 2e-39; Score: 160.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Ubiquilin 2.3e-65
    HMMSmart Heat shock chaperonin-binding 5.2
    HMMSmart Heat shock chaperonin-binding 0.00016
    HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 1.6e-07
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 9.1e-08
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 12.258
    superfamily UBA-like 7.9e-08

    See the detailed result >

    AT2G17200.1

    Model type
    Protein coding
    Short Description
    ubiquitin family protein
    Computational Description
    DSK2; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquilin (InterPro:IPR015496), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT2G17190.1); Has 15379 Blast hits to 7776 proteins in 854 species: Archae - 6; Bacteria - 3440; Metazoa - 5160; Fungi - 1735; Plants - 2506; Viruses - 174; Other Eukaryotes - 2358 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR