K26614

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26614

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26614

Determination of introduced cDNA(s)

  • J023082F07 - Rice Full-length cDNAs - Original: J023082F07

    full reading [+] show sequence

    Nucleotide sequence: J023082F07 - full reading 
    GATTCCCACC ACAAGCTAAT TAAGGTACCA GCAACTCCAT CACATCCTTA 
    ATTTGCAGCA GCAGGTAATT GTACACCGGC GAAGGAAATT AAAGGAAAGT 
    AGGAGATCGA TGGCCAAGCC AAGCGCCGCC GCCTGGTCCA CCGGCCTCTT 
    GGACTGCTTC GACGACTGCG GCCTATGCTG CATGACGTGC TGGTGCCCGT 
    GCATCACGTT CGGGCGGGTG GCGGAGATGG TGGACAGGGG GTCGACGTCG 
    TGCGGCACCA GCGGCGCGCT GTACGCGCTG CTGGCGACGG TCACCGGCTG 
    CCAGTTCGTC TACTCCTGCG TCTACCGGGG CAAGATGCGC GCCCAGTACG 
    GCCTCGGCGA CGACGCCGCC TGCGCCGACT GCTGCGTCCA CTTCTGGTGC 
    AACAAGTGCG CGCTGTGCCA GGAGTACCGC GAGCTCGTCG CCCGCGGCTA 
    CGACCCCAAG CTCGGATGGG ACCTCAACGT CCAGCGCGGC GCCGCCGCCG 
    CCGCAGCGCC CGCCGTGCAG CACATGGGCC GTTAAATGGA TTAGCTAGCT 
    ATAGCGTCAC CTCGTATCTA TCATATCATC GATCGATCGT ACTTTGGGCG 
    TGTGAAGTGG TGTCCAGTTA AAAAAAAGTT TTTTTTTTGG GAGCTAGTTA 
    TAGTATCCAG TTTTTTAAAA GAAATTTATA AGTGGTATAT TAATTATATG 
    CGTTTTTTTA CTTGATACTA TCTACTATGC CTCTATATAC TCCTGTAATT 
    AAGTTTGTGT AAGTATGGTG ACGCATGGTC AGGTTTTGTT TGTAATTCTC 
    TGCACTTAAT CAATTGTTTG TTGTATCT

    Gene models with high sequence identity

    1. AT1G14870.1 [+] show detail - PLANT CADMIUM RESISTANCE 2
      E-value: 4e-39; Score: 158.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function Cys-rich 1.5e-34
    HMMTigr Protein of unknown function Cys-rich 2.9e-30

    See the detailed result >

    AT1G14870.1

    Model type
    Protein coding
    Short Description
    PLANT CADMIUM RESISTANCE 2
    Computational Description
    PLANT CADMIUM RESISTANCE 2 (PCR2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G35525.1); Has 803 Blast hits to 802 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 115; Plants - 527; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR