K26627

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26627

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26627

Determination of introduced cDNA(s)

  • J023074P12 - Rice Full-length cDNAs - Original: J023074P12

    full reading [+] show sequence

    Nucleotide sequence: J023074P12 - full reading
    GACACAGCCC GCGCACCTCC ACAGCATTAG CCATCAACGA CCAGCATCTC 
    AGCTTTGCTC GCCTTCTCGA AGCTTCTGCT GCCATGGCGG ACCAGCTCTC
    CGAAGAGCAG ATTGGAGAGT TCAGGGAGGC CTTCAGCCTC TTCGACAAGG
    ACGGCGACGG TTCTATCACC ACCAAGGAGC TAGGAACCGT GATGCGAAGT
    CTAGGGCAGA ACCCAACGGA GGCGGAGCTG CAGGACATGA TCAGCGAGGT
    GGACACGGAC AGCAACGGCA ACATCGAATT CAAGGAGTTC CTGGGCCTGA
    TGGCGCGCAA GCTGAGGGAC AAGGACTCCG AGGAGGAGCT GAAGGAGGCA
    TTCCGCGTCT TCGACAAGGA CCAGAACGGT TTCATCTCTG CCACCGAGCT
    CCGCCACGTG ATGGCCAACA TCGGGGAGCG GCTCACCGAC GAGGAGGTCG
    GCGAGATGAT CAGCGAGGCC GACGTCGACG GCGACGGGCA GATCAACTAC
    GAGGAGTTCG TCAAGTGCAT GATGGCCAAG AAGAGGAGGA AGAGGATAGA
    GGAGAAGAGG GACCACGACG GCGGCAGCAG GACGAAGAGT GCAGGGCCCT
    CCGCCGCGCC GGCGAGCAAG CGTGGCCAGA AGTGCGTGAT CCTGTAATAA
    TTGAGCCAGC ACTGAGATTC TCATGAGTCA ATGAGCTACA CGAATGATGT
    GTGTTGTTGT AAAATGGCAA AACAATTGTG TGGGCGTGTA GTATGATGCT
    CCACTGAAAG ATCGAGAAAT AACACTGGCC AGTGCAAGTC C

    Gene models with high sequence identity

    1. AT3G56800.1 [+] show detail - calmodulin 3
      E-value: 8e-68; Score: 253.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam EF-hand 0.00000001
    HMMPfam EF-hand 0.0000018
    HMMPfam EF-hand 0.0000000047
    HMMPfam EF-hand 0.000000011
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    HMMPanther CALMODULIN 1.1e-91
    HMMPanther CALCIUM BINDING PROTEIN 1.1e-91
    ProfileScan EF-HAND 2 16.355
    ProfileScan EF-HAND 2 12.923
    ProfileScan EF-HAND 2 16.661
    ProfileScan EF-HAND 2 13.732
    superfamily EF-hand 3.5e-57
    HMMSmart Calcium-binding EF-hand 0.00000005
    HMMSmart Calcium-binding EF-hand 0.0000075
    HMMSmart Calcium-binding EF-hand 0.00000013
    HMMSmart Calcium-binding EF-hand 0.000000049
    Gene3D EF-hand-like domain 3.1e-51

    See the detailed result >

    AT3G56800.1

    Model type
    Protein coding
    Short Description
    calmodulin 3
    Curator Summary
    encodes a calmodulin
    Computational Description
    calmodulin 3 (CAM3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: calcium-mediated signaling; LOCATED IN: vacuole, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3); Has 34068 Blast hits to 23201 proteins in 1763 species: Archae - 4; Bacteria - 227; Metazoa - 14490; Fungi - 7344; Plants - 6998; Viruses - 0; Other Eukaryotes - 5005 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR