K26629

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26629

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26629

Determination of introduced cDNA(s)

  • J013063L05 - Rice Full-length cDNAs - Original: J013063L05

    full reading [+] show sequence

    Nucleotide sequence: J013063L05 - full reading
    GTCCGCCTCT CCTCTCTTCC TCCCCACCTC CGTCTCCTCT CTTCCGCACC 
    GGCGAATCCC CAGGCGAGCC TTCTAGAACC TTCGATTGCT CGGGCGGGCC
    TCCTCCTCCG CGAGCCGCAG CCATGGCGAC CGTCATGCAG AAGATCAAGG
    ACATCGAGGA CGAGATGGCA AGGACGCAGA AGAACAAGGC CACTGCACAC
    CATCTTGGTC TTCTGAAGGC TAAACTTGCA AAATTACGCC GTGAGTTGCT
    GACTCCTACA TCCAAAGGTG GTGGTGGCGG TGCTGGCGAG GGATTTGATG
    TGACAAAAAG TGGAGATGCA CGTGTTGGTT TGGTGGGCTT TCCTTCAGTT
    GGAAAATCAA CATTGTTGAA CAAGCTGACA GGAACATTTT CAGAGGTTGC
    AGCCTACGAA TTCACAACTT TAACATGTAT TCCTGGAGTT ATAATGTACA
    AAGGGGCTAA AATCCAGCTT TTAGATCTTC CAGGAATCAT TGAGGGTGCT
    AAAGATGGAA AGGGTAGAGG AAGGCAGGTT ATCAGCACAG CAAGGACATG
    CAATGTCATT CTGATTGTTC TTGATGCCAT TAAGCCAATA ACCCACAAGC
    GGCTTATTGA GAAGGAGCTT GAGGGATTTG GCATTAGGTT GAACAAGACA
    CCCCCCAATT TGACATTTAG AAGAAAGGAC AAGGGTGGCA TCAATTTTAC
    ATCAACTGTG ACGAACACAA ACTTGGATCT TGAAACAGTA AAAGCAATCT
    GCAGTGAGTA CAGGATACAC AATGCTGATG TCTCCCTTAG ATATGATGCA
    ACAGCAGATG ATCTCATAGA TGTGATTGAG GGAAGCAGAA TTTACATGCC
    TTGCATCTAT GTTGTTAATA AGATTGATCA GATAACACTT GAAGAGCTGG
    AAATCTTGGA TAAACTTCCC CACTACTGCC CAATTAGTGC TCATCTTGAG
    TGGAATCTCG ATGGTCTTCT AGAGATGATC TGGGAATACC TGGATTTGGT
    TAGGATATAC ACAAAACCGA AAGGTTTAAA CCCAGATTAT GAGGACCCTG
    TAATCGTATC CTCTAAGAAG AAAACAGTGG AAGACTTCTG CAACAGAATC
    CACAAGGACA TGGTGAAACA ATTTAAATAT GCATTGGTGT GGGGTTCTAG
    CGTGAAGCAT AAGCCTCAGA GAGTTGGCAA GGAACATGAG CTTGAGGATG
    AGGACGTTGT CCAGATCATC AAGAAAGTTT AGGTATATTG TAGTGGTCAC
    GTTCTGCAAA CCTGGAAGGA GGTATGAGCT ATGAGAATTT TGAGAAGCAG
    TCACTTTTAC TGCGTGTTAT TTTGCTAGCT ATGATGCCCA TAGATGATTG
    GCTGTTCCCA TGAACGTTTC AATGCAATCA AAATGTAGAC GGACAGATTT
    TCCTTCTGTC AAGTTAGCCT TGTAATTGTG ATCTTTGTCT GATCTTCCTG
    TTGCTATATA TATGGTGAGT CACCGATGAA CACAGCAGTT GAACACATGG
    AAAGATGCTT TGCTTATCTT CAGAAAGATG AAAGATGATT CACATGCT

    Gene models with high sequence identity

    1. AT4G39520.1 [+] show detail - GTP-binding protein-related
      E-value: 2e-173; Score: 606.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan GTP1/OBG 3.7e-31
    FPrintScan GTP1/OBG 3.7e-31
    FPrintScan GTP1/OBG 3.7e-31
    FPrintScan GTP1/OBG 3.7e-31
    superfamily P-loop containing nucleoside triphosphate hyd 1e-52
    HMMPanther DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN 1.1e-108
    HMMPanther DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN 1.1e-108
    PatternScan GTP1/OBG, conserved site 0
    Gene3D no description 2.2e-43
    HMMPfam TGS 3.5e-25
    HMMPfam GTP-binding protein, HSR1-related 2.9e-20
    Coil coiled-coil 0
    HMMTigr Small GTP-binding protein 2.2e-26

    See the detailed result >

    AT4G39520.1

    Model type
    Protein coding
    Short Description
    GTP-binding protein-related
    Curator Summary
    Encodes a member of the DRG (developmentally regulated G-protein) family. Has GTPase activity.
    Computational Description
    GTP-binding protein-related; FUNCTIONS IN: GDP binding, GTP binding, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: developmentally regulated G-protein 1 (TAIR:AT1G17470.2); Has 19252 Blast hits to 19228 proteins in 2957 species: Archae - 773; Bacteria - 12312; Metazoa - 831; Fungi - 661; Plants - 370; Viruses - 0; Other Eukaryotes - 4305 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR