K26629

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26629

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26629

Determination of introduced cDNA(s)

J013063L05 - Rice Full-length cDNAs - Original: J013063L05

full reading [+] show sequence

GTCCGCCTCT CCTCTCTTCC TCCCCACCTC CGTCTCCTCT CTTCCGCACC 
GGCGAATCCC CAGGCGAGCC TTCTAGAACC TTCGATTGCT CGGGCGGGCC 
TCCTCCTCCG CGAGCCGCAG CCATGGCGAC CGTCATGCAG AAGATCAAGG 
ACATCGAGGA CGAGATGGCA AGGACGCAGA AGAACAAGGC CACTGCACAC 
CATCTTGGTC TTCTGAAGGC TAAACTTGCA AAATTACGCC GTGAGTTGCT 
GACTCCTACA TCCAAAGGTG GTGGTGGCGG TGCTGGCGAG GGATTTGATG 
TGACAAAAAG TGGAGATGCA CGTGTTGGTT TGGTGGGCTT TCCTTCAGTT 
GGAAAATCAA CATTGTTGAA CAAGCTGACA GGAACATTTT CAGAGGTTGC 
AGCCTACGAA TTCACAACTT TAACATGTAT TCCTGGAGTT ATAATGTACA 
AAGGGGCTAA AATCCAGCTT TTAGATCTTC CAGGAATCAT TGAGGGTGCT 
AAAGATGGAA AGGGTAGAGG AAGGCAGGTT ATCAGCACAG CAAGGACATG 
CAATGTCATT CTGATTGTTC TTGATGCCAT TAAGCCAATA ACCCACAAGC 
GGCTTATTGA GAAGGAGCTT GAGGGATTTG GCATTAGGTT GAACAAGACA 
CCCCCCAATT TGACATTTAG AAGAAAGGAC AAGGGTGGCA TCAATTTTAC 
ATCAACTGTG ACGAACACAA ACTTGGATCT TGAAACAGTA AAAGCAATCT 
GCAGTGAGTA CAGGATACAC AATGCTGATG TCTCCCTTAG ATATGATGCA 
ACAGCAGATG ATCTCATAGA TGTGATTGAG GGAAGCAGAA TTTACATGCC 
TTGCATCTAT GTTGTTAATA AGATTGATCA GATAACACTT GAAGAGCTGG 
AAATCTTGGA TAAACTTCCC CACTACTGCC CAATTAGTGC TCATCTTGAG 
TGGAATCTCG ATGGTCTTCT AGAGATGATC TGGGAATACC TGGATTTGGT 
TAGGATATAC ACAAAACCGA AAGGTTTAAA CCCAGATTAT GAGGACCCTG 
TAATCGTATC CTCTAAGAAG AAAACAGTGG AAGACTTCTG CAACAGAATC 
CACAAGGACA TGGTGAAACA ATTTAAATAT GCATTGGTGT GGGGTTCTAG 
CGTGAAGCAT AAGCCTCAGA GAGTTGGCAA GGAACATGAG CTTGAGGATG 
AGGACGTTGT CCAGATCATC AAGAAAGTTT AGGTATATTG TAGTGGTCAC 
GTTCTGCAAA CCTGGAAGGA GGTATGAGCT ATGAGAATTT TGAGAAGCAG 
TCACTTTTAC TGCGTGTTAT TTTGCTAGCT ATGATGCCCA TAGATGATTG 
GCTGTTCCCA TGAACGTTTC AATGCAATCA AAATGTAGAC GGACAGATTT 
TCCTTCTGTC AAGTTAGCCT TGTAATTGTG ATCTTTGTCT GATCTTCCTG 
TTGCTATATA TATGGTGAGT CACCGATGAA CACAGCAGTT GAACACATGG 
AAAGATGCTT TGCTTATCTT CAGAAAGATG AAAGATGATT CACATGCT

Gene models with high sequence identity

AT4G39520.1 [+] show detail - GTP-binding protein-related
E-value: 2e-173; Score: 606.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	GTP1/OBG	3.7e-31
FPrintScan	GTP1/OBG	3.7e-31
FPrintScan	GTP1/OBG	3.7e-31
FPrintScan	GTP1/OBG	3.7e-31
superfamily	P-loop containing nucleoside triphosphate hyd	1e-52
HMMPanther	DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN	1.1e-108
HMMPanther	DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN	1.1e-108
PatternScan	GTP1/OBG, conserved site	0
Gene3D	no description	2.2e-43
HMMPfam	TGS	3.5e-25
HMMPfam	GTP-binding protein, HSR1-related	2.9e-20
Coil	coiled-coil	0
HMMTigr	Small GTP-binding protein	2.2e-26

See the detailed result >

AT4G39520.1

Model type: Protein coding
Short Description: GTP-binding protein-related
Curator Summary: Encodes a member of the DRG (developmentally regulated G-protein) family. Has GTPase activity.
Computational Description: GTP-binding protein-related; FUNCTIONS IN: GDP binding, GTP binding, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), TGS (InterPro:IPR004095), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: developmentally regulated G-protein 1 (TAIR:AT1G17470.2); Has 19252 Blast hits to 19228 proteins in 2957 species: Archae - 773; Bacteria - 12312; Metazoa - 831; Fungi - 661; Plants - 370; Viruses - 0; Other Eukaryotes - 4305 (source: NCBI BLink).
Link: InterPro Scan - TAIR