K26634

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26634

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26634

Determination of introduced cDNA(s)

  • J013099E09 - Rice Full-length cDNAs - Original: J013099E09

    full reading [+] show sequence

    Nucleotide sequence: J013099E09 - full reading 
    GACTTCCCCC ATTCCATTCC ATTCCATTCC TTTCCTTTCT CTCTCCTCCC 
    CCTCGCGCCA TTAAGGCTCC AGAGCTTTCT CCCTCTTCAC TTGGGGGGGA 
    CTGGAAGAAG AGGAGGAGCT CGGCTCGAGG CCCCAAGAAT CGAGTTCGTC 
    GGAGGCGGCG GATGCCGGAG AGGTCCGAGC TGGGGCGGCA GCTCCCGCTG 
    AGAGGGCCCC TCAAGGCACT GGAGGCCGAC ATCCACCATG CCAACACCAT 
    GGCTAATGCT ATCCAGAGGA ACTATGGTGG AGCATGTGTG CAGATGAGGT 
    TGTCGTGCAG CTCACTGGCG CCATTCTTTC TTTACCTCAT CCAGTGGCTG 
    GATTGTGGCT GCTGTTATGC TCTTCCCAGT TATCTAGGCC TTTTTCACAT 
    TCTCATTTGC AAGGTTTATG CAGATGGAGA TAGCTCAGTA TCAACGTATG 
    AAAGGCGTGC AAGCCTTAGA GAATTCTATG CGATCATCTA CCCTATCCTT 
    CAACAGCTTG AGGGTAGTTT GATTGAGAGG GACCTGAAAG GGAAAGGGCG 
    ATGTAAAGAC ATAGTGAGTA GGAAGCGGCT CGAAGATTGG AGGAAGCTTT 
    GTAACAAGGA TGTGGAAAGG GAGGATGAAT GTGGGATTTG CATGGAGACA 
    TGCACCAAGA TGGTTCTGCC TAATTGCAGT CATGCAATGT GCATAAAATG 
    CTACAGGGAC TGGTATAGAA GATCAGAGTC TTGCCCTTTC TGCCAAGGAA 
    GCCTTAAACG AATTCGCTCA AGAGACCTGT GGGTGCTCAC AAATTACAAT 
    GATGTGGTTG ATCCTGTAAC TCTAGAAAGA GAAAATGTGA GGCATTTCTA 
    CAGTTATATT GATAGTTTGC CTCTTATACT TCCAGATAAT ATTTTCTTCT 
    TCTACTATGA TTACCTACTC TAATCTGGAA ACACCACAAG TTGTGTGTGT 
    GAAATTATGA AAGCGGAGAA AGCCATTTGT AGATTTTTCT TTGTTAGAGC 
    TTAGAAGGAT GGTCTTTCCA CCTCTGACAA AACACCTTTT ACTTTAGTGT 
    AGCTGCATAA CACTTCTAAA GCAACTGTAA ATAAAATCTG CAGGTGAAGT 
    TCATTGT

    Gene models with high sequence identity

    1. AT1G24440.1 [+] show detail - RING/U-box superfamily protein
      E-value: 1e-64; Score: 243.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 0.00000000000014
    HMMSmart Zinc finger, RING-type 0.000071
    Gene3D no description 0.000000011
    ProfileScan Zinc finger, RING-type 11.53
    PatternScan Zinc finger, RING-type, conserved site 0
    Coil coiled-coil 0

    See the detailed result >

    AT1G24440.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G13195.1); Has 869 Blast hits to 869 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 288; Fungi - 71; Plants - 339; Viruses - 31; Other Eukaryotes - 140 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR