K26637

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26637

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26637

Determination of introduced cDNA(s)

  • J023116G14 - Rice Full-length cDNAs - Original: J023116G14

    full reading [+] show sequence

    Nucleotide sequence: J023116G14 - full reading 
    GTTATTCCAG ATGCTATAGG AGGACTTGAT CATCTTGAAG AGCTTCGTCT 
    TGCTTCCAAT GCCTTGATTT CTCTTCCTGA TTCCATTGGA CTGCTATTGA 
    ATTTGAGGAT TCTGAATGTG GGAAGCAACA GGCTAAGGTC ATTGCCAGAT 
    AGCATCTCAA AGTGCAGGTC ATTAATTGAG CTTGATGCGA GCTACAACGG 
    GCTCGCTTAT CTGCCAACCA ACATTGGGTA TGAGCTGGTA AATCTGCGGA 
    AACTCTGGGT CCATATGAAC AAGTTGCGGT CACTTCCATC ATCTATCTGC 
    GAGATGAGAT CATTGTACCT CCTGGATGCA CATTTCAATG AACTATGTGG 
    TCTGCCATCT GCCATAGGGA AACTTTCAAG TCTTGAAATT CTGAACCTGA 
    GCAGCAACTT TAGTGACCTG AAGGATCTCC CTGCTTCTTT CGGTGACCTG 
    CTGAATCTGC GCGAGCTTGA CCTCAGCAAC AACCAGATCC ATGCTCTTCC 
    CGACAATTTT GGTCGGCTGG ATAAGCTAGA GAAGCTCAAC CTGGAGCAAA 
    ATCCCCTTTC TATGCCGCCA ATGGAGATCG TGAACAAAGG CGTGGACGCG 
    GTGAAAGAAT ACATGTTGCA GAGGTGGCTT GACATCTTGC TCGAGGAAGA 
    ACGGAAGAGC ATCGCAGCAG CGGAGAGCCC TCAAGCACCG ACCACTCCTT 
    CGGCCTGGCT GGCACGCAGC GTCTCCTGGG TCTCCGACGT TTCCGGAAGC 
    CTTGTGGGGT ACCTCAGTGG CGAGAACAAG ACGGAGAAAG ATGCCTACCT 
    GGATCAGCAG TACTGAAAGC GCTCACCTGT GTGGTGTTTG TGCACCGTGT 
    ACATACTATA AGCGTTCCAT GCTTACCATC TCATCTGGGA AAATCGTTTT 
    GTGTTCCTGG TGAGTCGAGC CATACACTCG TGCTAGGCTT GCATCCCCCA 
    AAGCAGGCTT TGGGGTTTAT TTTGCCCGTT TTAACTTCCG GACGTCCTTT 
    TC

    Gene models with high sequence identity

    1. AT5G05850.1 [+] show detail - plant intracellular ras group-related LRR 1
      E-value: 4e-74; Score: 275.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Leucine-rich repeat 28
    HMMPfam Leucine-rich repeat 390
    HMMPfam Leucine-rich repeat 0.36
    Gene3D G3DSA:3.80.10.10 4.60000044330908e-33
    superfamily SSF52058 2.6e-40
    HMMSmart Leucine-rich repeat, typical subtype 0.0129999995835436
    HMMSmart Leucine-rich repeat, typical subtype 0.0719999952919342
    HMMSmart Leucine-rich repeat, typical subtype 0.00670000055441902
    HMMPanther PTHR23155:SF34 4.30000170646176e-111
    HMMPanther PTHR23155 4.30000170646176e-111

    See the detailed result >

    AT5G05850.1

    Model type
    Protein coding
    Short Description
    plant intracellular ras group-related LRR 1
    Curator Summary
    Encodes PIRL1, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.
    Computational Description
    plant intracellular ras group-related LRR 1 (PIRL1); INVOLVED IN: microgametogenesis, pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 9 (TAIR:AT3G11330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR