K26646

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26646

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26646

Determination of introduced cDNA(s)

  • J023069J05 - Rice Full-length cDNAs - Original: J023069J05

    full reading [+] show sequence

    Nucleotide sequence: J023069J05 - full reading 
    GAAATTTTGA TACTTCCAAG TCGCGCGTGA TTTGTCAGCT GTTAGTTGTC 
    ACACCTACTC ATCAGCCAAC CAATTCGCCA TCAATAGCAA ACCAAGCGGA 
    TTGATCATCT CATCTCATCT CATCGACCGA GCATTCTAGC GAGCGAGCGG 
    CCAAGCCAGC AAGATCGACT CCTCACTCTC TCACCGATCT AGCAGCAGCA 
    GTGGTAGTAG CTAGCAGCGT CAGCGTAGCA AGGGGTTGCG AGAATGGCCT 
    CGCCGTCAGC GCCGGGGCCG AAGCTGCAGA AGGCGATGGT GGCGGTGGAC 
    GAGAGCGAGT TCAGCCACCA CGCGCTGGAG TGGGCGCTGC GCAACCTCGC 
    GCCGACCATC GCGCCGCCGC TGCTCGTGCT CACCGTGCAG CCGCTCCTCC 
    CCCTCGGCTA CGTCTCCGCC GCCTCCTTCG GCTCCCCTCT GGGCACCCCC 
    GTTGTAGCCC CGGAGCTGAT CAAGGCGATG CAGGAGCAGC AGCAGCAGCT 
    CTCGCAGGCG CTCCTCGACA AGGCCAAGCA GATCTGCGCG CAGCATGGGG 
    TGGCTGTAGA GACAATGATC AAAGTAGGAG ATCCTAAGGA GATGATATGT 
    CAAGCAGCTG AGGAATCAAA GGTTGATTTA CTGATCGTTG GGAGTCACAG 
    CCGTGGACCT GTACAAAGGT TGTTTCTTGG AAGTGTCAGC AATTACTGTA 
    TGCATCATTC GAAGTGCCCA GTTCTTGTTG TGAAGAAGCA GGAGTAAATA 
    AGCTTTCCGA ATCTCAATAA AAATCTTTGT GTATTGTCGA TGTGTTATCC 
    TCAACAATGC AATAAACAAA GCCGTATTAG ATGATATTCA GATAACTGAA 
    TAATGTATTG TGTAAATAGT CAAGATTATC TTGCAAATAA ATATCCGCTT 
    CTTGTTGCTG TAAAGTAAGG GCGTTTCCTT TAGGAGTATC ATCCATGTAG 
    CTGGCATCTG TTGCAGAACC GAAGACGATG AACACCCAAC TTGTGTATAT 
    ATGTGATATG TGTGTATGTT TTGTTACTTA TCC

    Gene models with high sequence identity

    1. AT1G68300.1 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
      E-value: 3e-23; Score: 106.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam UspA 2.1e-34
    superfamily Adenine nucleotide alpha hydrolases-like 1.5e-36
    FPrintScan Universal stress protein A 6.6e-17
    FPrintScan Universal stress protein A 6.6e-17
    FPrintScan Universal stress protein A 6.6e-17
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 5.9e-36

    See the detailed result >

    AT1G68300.1

    Model type
    Protein coding
    Short Description
    Adenine nucleotide alpha hydrolases-like superfamily protein
    Computational Description
    Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.4); Has 7821 Blast hits to 7529 proteins in 1691 species: Archae - 688; Bacteria - 6019; Metazoa - 129; Fungi - 89; Plants - 708; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR