K26650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26650

Determination of introduced cDNA(s)

J033069G22 - Rice Full-length cDNAs - Original: J033069G22

full reading [+] show sequence

ATGATCAGTA CTATACCAAT GTTCTTCTGA AAATCAATGC TAAGCTTGGT 
GGAATGAACT CCAAGCTTTC ATTGGAGCAT CGACATATGA TTCCCATTGT 
CAATCAAACA CCCACATTAA TTTTGGGAAT GGATGTTTCA CATGGTTCGC 
CAGGTCGAGC TGATGTACCA TCAATTGCTG CGGTTGTTGG GTCCAGATGT 
TGGCCGCTGA TATCACGCTA CAGAGCATCT GTCCGGACCC AGTCTCCAAA 
GGTAGAGATG ATTGATTCTC TTTTTAAGCC ACTGGACGAT GGAAAAGATG 
ATGGCATAAT AAGGGAACTT CTACTGGACT TCTACAAGAC CAGTCAACAA 
AGAAAGCCGA AGCAGATAAT CATTTTCAGG GATGGTGTGA GCGAGTCTCA 
ATTTAGCCAA GTACTGAATG TTGAGCTTAA TCAAATTATA AAGGCATATC 
AATATATGGA TCAGGGGCCA ATTCCTAAGT TCACAGTGAT CATTGCTCAA 
AAGAATCACC ACACAAAACT TTTCCAAGAA AATACTCCAG ACAACGTTCC 
TCCAGGGACT GTTGTAGATT CTGGTATTGT TCATCCAAGA CAGTATGATT 
TCTACATGTA TGCTCATGCT GGACCTATAG GTACCTCAAG GCCCACCCAT 
TACCATGTCT TGCTCGATGA GATTGGTTTC TTGCCCGATG ACGTGCAGAA 
ACTAGTTTTG TCGCTTTCTT ATGTGTATCA GAGGAGCACC ACTGCAATAT 
CTGTTGTGGC ACCTATCTGT TATGCTCATC TCGCAGCAGC GCAGATGGGC 
CAGTTCATGA AATTCGAGGA ATTCGCTGAG ACTTCGTCTG GAAGTGGTGG 
TGTCCCTTCG TCATCAGGAG CAGTGGTCCC AGAGTTGCCG CGCCTGCATG 
CTGATGTCTG CAGTTCGATG TTCTTTTGTT GAGGTGGTGT TAGTCAGCTA 
GTGTGCAGCA GGGCTGATCC TTCTTTTTTT TTTTGAAGGA ACCAAATACG 
GAGTACTTGT TAGGCACTTT TGTAGTACTC TAGATTGATA CTATGAGATA 
CATCTAGGTT GGGTAGGGAG CATTTTTTTT TAGATGATAT AGTGCTCCTA 
ATGATATAGT TCTGTTAGTG CTCAGCTATT AGGAAGTAAA GGCTTACCCT 
TGATGGTAGG TTTATGAATT CAAGACGCTA ACTTTGCGCC ATATCTAATT 
GTCAACCAGT T

Gene models with high sequence identity

AT2G32940.1 [+] show detail - Argonaute family protein
E-value: 3e-119; Score: 425.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Stem cell self-renewal protein Piwi	36.591
HMMPanther	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	1.8e-120
HMMPfam	Stem cell self-renewal protein Piwi	1.6e-88
superfamily	Polynucleotidyl transferase, ribonuclease H fold	2.4e-20

See the detailed result >

AT2G32940.1

Model type: Protein coding
Short Description: Argonaute family protein
Curator Summary: Encodes a nuclear localized 879-amino-acid protein that contains conserved PAZ and PIWI domains that is important for the accumulation of specific heterochromatin-related siRNAs, and for DNA methylation and transcriptional gene silencing.
Computational Description: ARGONAUTE 6 (AGO6); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Argonaute/Dicer protein, PAZ (InterPro:IPR003100); BEST Arabidopsis thaliana protein match is: Argonaute family protein (TAIR:AT5G21150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR