K26716

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26716

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26716

Determination of introduced cDNA(s)

  • J013002O13 - Rice Full-length cDNAs - Original: J013002O13

    full reading [+] show sequence

    Nucleotide sequence: J013002O13 - full reading 
    GACGGGCACC ACAAGCTCGT CACCTGCTTT CTCTTCCACT CAATCCAATC 
    CTCTCTCTCT CTTTTCCAAT CTCAATTACT ACAATCCTCT CCTCTCCTCT 
    CCTCTCCTCT CCTTCCTTTG TCGCGAGTCA CAGGCACACA GACATGGCCG 
    CCGTGAACAC AGTGTCGTCG CTGCCCTGTA GCAAAGCTGG CGCCGCCGTA 
    GCCGGGGGAG CTCCGAGGCC GTCGACCTGC TCCGTATTCT ACCCTCCTCG 
    TTGCTGGTCG AAGCGAAGCA GCGGTAATGG CGTGCGGGCG CAGGCGTCGA 
    CGACGGAGAC GACCGCAGCG CCGGCTGCGG AGGTGACTAC TAAGGTGGAG 
    AAGGTGTCGA AGAAGCAGGT GGATGGCGTG GTGACGAACA AGTACAGGCC 
    CAAGGAGCCG TACACGGGGC GGTGCCTCCT GAACACGAGG ATCACCGGCG 
    ACGACGCCCC CGGTGAGACG TGGCACATGG TGTTCAGCAC CGACGGCGAG 
    ATCCCCTACC GCGAGGGGCA GTCCATCGGC GTCATCCCCG ACGGCATCGA 
    CAAGAACGGC AAGCCCCACA AGCTCCGCCT CTACTCCATC GCCAGCAGCG 
    CCATCGGGGA CTTCGCCGAC TCCAAGACGG TATCGCTGTG CGTGAAGAGG 
    CTGGTGTACA CCAACGATCA GGGAGAGATC GTCAAAGGAG TCTGCTCCAA 
    CTTCCTCTGT GACCTGAAGC CTGGTTCGGA CGTGAAGATC ACGGGGCCAG 
    TGGGGAAGGA GATGCTGATG CCCAAGGACC CCAACGCCAC CATCATCATG 
    CTGGGCACCG GCACCGGCAT CGCGCCCTTC AGGTCCTTCC TGTGGAAGAT 
    GTTCTTCGAG GAGCACGACG ACTACAAGTT CAACGGCCTG GCGTGGCTCT 
    TCCTCGGGGT GCCCACCAGC AGCACGCTGC TGTACAGGGA GGAGTTCGAG 
    CGGATGAAGG AGATCGCGCC GGAGAGGTTC CGGCTGGACT TCGCGGTGAG 
    CCGGGAGCAG ACGAACGCGG CGGGGGAGAA GATGTACATC CAGACGCGGA 
    TGGCGGAGTA CAAGGACGAG CTGTGGGAGC TGCTCAAGAA GGACAACACC 
    TACGTCTACA TGTGCGGCCT CAAGGGCATG GAGAAAGGCA TCGACGACAT 
    CATGATCGAC CTCGCTGCAA AAGACGGCAT CGACTGGCTT GACTACAAGA 
    AGCAGCTGAA GAAGTCGGAG CAATGGAATG TGGAAGTCTA CTGATGGATA 
    TATATATGTT AATAATTAAT TAATCCCTTT TTATCTCGAT TTTCATGCAT 
    GCATGCGCAA CCTGCATACG CCATCTTGTT GTACTCGATC TGATCTCATC 
    TGATGAGATG CATGTAGATA TTATACTGAC GATTCGTCGA CTATAAAGTG 
    GTTTCCCATT TTCTGCTGTA TTTTG

    Gene models with high sequence identity

    1. AT5G66190.1 [+] show detail - ferredoxin-NADP(+)-oxidoreductase 1
      E-value: 2e-156; Score: 549.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ferredoxin reductase-like, C-terminal NADP-li 3.4e-53
    superfamily Riboflavin synthase-like beta-barrel 2.3e-43
    HMMPanther Ferredoxin Reductase 1.4e-136
    HMMPanther FLAVODOXIN-RELATED 1.4e-136
    HMMPIR Ferredoxin--NADP reductase 3.5e-245
    Gene3D no description 2.2e-49
    Gene3D no description 3.3e-46
    HMMPfam Oxidoreductase FAD/NAD(P)-binding 2.8e-26
    HMMPfam Oxidoreductase, FAD-binding domain 7.9e-05
    ProfileScan Ferredoxin reductase-type FAD-binding domain 13.998
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.8e-27
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.8e-27
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.8e-27
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.8e-27
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.8e-27
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.8e-27
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.8e-27
    FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.8e-27

    See the detailed result >

    AT5G66190.1

    Model type
    Protein coding
    Short Description
    ferredoxin-NADP(+)-oxidoreductase 1
    Curator Summary
    Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.
    Computational Description
    ferredoxin-NADP(+)-oxidoreductase 1 (FNR1); FUNCTIONS IN: oxidoreductase activity, electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, poly(U) RNA binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, photosynthetic electron transport chain, defense response to bacterium; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR