K26743

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26743

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26743

Determination of introduced cDNA(s)

  • J033127A22 - Rice Full-length cDNAs - Original: J033127A22

    full reading [+] show sequence

    Nucleotide sequence: J033127A22 - full reading 
    GGCTCACCGC ACGGCACACG CGCCCGGGGG ATTTGGAAAT TGGAAATTTC 
    AGATCCCAGA TCTCGTCTCG CCGATCTCGC CCTCCGCTAA GCCATGGGTT 
    CGGTTGTGGA TGCTCCAACA GTTGTGGCTG GACAGGAGGA GGTCACTGAC 
    AACATGTTGG GTGACAAGAA AGTTACAGTT GTATTTGTTC TAGGTGGTCC 
    TGGGAGTGGA AAGGGCACAC AGTGTGCCAA CATTGTTGAA CACTTTGGAT 
    TCATTCATCT TAGTGCTGGA GACCTTTTGC GTGCAGAGAT CAAATCTGGC 
    TCTGAGAACG GAACTATGAT CGAGAACATG ATAAAGGAGG GAAAGATTGT 
    TCCATCTGAG GTAACTATAA AACTCTTGCA GGAAGCCATG ATTAAAAGTG 
    GAAATGATAA GTTCCTTATT GATGGATTTC CAAGGAACGA AGAGAATCGT 
    GCTGCATTTG AGAACGTTAC AAAAATAACT CCTGCGTTTG TGCTATTCTT 
    CGATTGTTCT GAGGAAGAGA TGGAAAGACG TCTTTTGGGA CGCAATCAGG 
    GAAGAGTTGA CGATAACATT GAGACTATCA GGAAAAGGTT CAAAGTTTTT 
    GTTAATCCAG TTTGCCTGTC ATTGAGTACT ATAATGCAAA GGACAAGGTT 
    AAAAAGATTG ATGCTGCAAA ACCAATTCCT GAGGTGTTTG AAGATGTCAA 
    AGCCATTTTC GCTCCATATG CGCCAAATGC CGCTTAGAGC AATAGAAAGG 
    ACCACATGAG TGATAAATTG CACCAACTTT AGAAAAGGCT TTGCTCTCAG 
    GTGTGACTAC AAATCTGTGA TTACGAAACC GTTGATATAG AAGAGAGTTT 
    TGGCTCATAT GAGCTACCTG CATACCCGTA GGCAATTTGA TTTGTTACTT 
    GCAATAATTA ATTTTGATCC CCATTTCCTG CTAGATTAAC TTTTACGAGA 
    GTTGGCGTAT CGTATGTAAT GCTGTACTTG TACCAATGTA TCATTTACCT 
    CATGGACGAT GAAACTTTGT CCTCCCGCCA GTTTCTGGTG GTATAATACA 
    GAAAGTGGAA CTTCCGAATT TTTTTTTGGT TAGTTTCTAA AACAATGTTC 
    ACTGAACAGC TAATAATTAT TCAATTTGTT ATTG

    Gene models with high sequence identity

    1. AT5G26667.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 7e-73; Score: 36.60

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.5e-44
    PatternScan Adenylate kinase 0
    HMMPanther UMP-CMP KINASE (UMP-CMPK) 1.4e-92
    HMMPanther Adenylate kinase 1.4e-92
    superfamily P-loop containing nucleoside triphosphate hyd 1.5e-37
    FPrintScan Adenylate kinase 1.4e-25
    FPrintScan Adenylate kinase 1.4e-25
    FPrintScan Adenylate kinase 1.4e-25
    FPrintScan Adenylate kinase 1.4e-25
    HMMTigr UMP-CMP kinase 8.2e-94
    HMMPfam Adenylate kinase 5.1e-44

    See the detailed result >

    AT5G26667.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Curator Summary
    encodes a uridine 5'-monophosphate (UMP)/cytidine 5'-monophosphate (CMP) kinase.
    Computational Description
    PYR6; FUNCTIONS IN: uridylate kinase activity, cytidylate kinase activity; INVOLVED IN: pyrimidine ribonucleoside monophosphate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: UMP-CMP kinase (InterPro:IPR006266), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G60180.1); Has 14045 Blast hits to 13848 proteins in 4925 species: Archae - 109; Bacteria - 9053; Metazoa - 1251; Fungi - 483; Plants - 459; Viruses - 0; Other Eukaryotes - 2690 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR