K26749

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26749

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26749

Determination of introduced cDNA(s)

  • J033028F04 - Rice Full-length cDNAs - Original: J033028F04

    full reading [+] show sequence

    Nucleotide sequence: J033028F04 - full reading 
    GGCTTCCTTT TCGTTCCCCT CCGCGGCTTC ACCCCGTGTC CCCGTCACTC 
    TCCGGCCAGC GCCTCCACTC CACTCCCCTC CCCACACTCC CCCGCGTCTC 
    CAGCGCCGCC GCCGCGGTAA TGTGACCTCG CGCGCGGCAC TCCGGGATTA 
    TCTAGGAAGA GCACGAGGAG GAGGCGCCGA TCTGTAGGGC TCGTTGTTAG 
    TCATCTCGAC CAAGGGACCG GTGAAGCTGG AAAAATGCCT GATATCCAGT 
    TAGGGTGCCA CACTATAAGG TCCCATGGAA CCAGTGTGGC AAGACTCCAC 
    ATGTATGACT GAATACTTCT CTTTCTTGCT GTTGTTGATG GGCTGCTAAA 
    CATAATTGAG CCTTTTCACC GCTTTGTTGG ACGTGACATG ATGACAGACT 
    TGAGATATCC ACTAAAGGGC AACACAATTC CATTTTGGGC CGTTCCACTT 
    ATTGCAATTG TGCTGCCCTG GGTTGTCTTT GGTGGAATTT ACTTCAAAAA 
    GAAAAATGTC TATGATTTAC ACCATGGCAT ACTGGGGATT CTATATTCGG 
    TACTTATAAC TGCTGTGATT ACTGATGCAA TTAAGGATGG TGTTGGTCGT 
    CCTCGCCCAG ATTTCTTTTG GCGTTGTTTC CCTGATGGAA TACCTAAGTT 
    TGATAATGTC ACTACAAATG TCATATGCCA TGGAGAAAAG AGTGTTATCA 
    AGGAAGGCCA CAAGAGCTTT CCAAGTGGGC ATTCTTCATG GTCTTTTGCT 
    GGTCTAGGTT TTCTTGCGTG GTACTTGGCT GGTAAACTTA AGGCTTTTGA 
    TCGCAAAGGC CACATTGCAA AGTTATGCAT AGTATTTCTG CCTCTACTTG 
    TTGCGTCCCT TGTGGCAGTC TCTCGAGTTG ATGATTACTG GCATCACTGG 
    CAAGACGTAT TTGCAGGTGG CATTATAGGT CTTACGGTTT CTTCGTTTTG 
    TTATCTGCAG TTCTTCCCAT ATCCATTTGA TGCTGATGCT GTATGGCCCC 
    CATGCATACT TCCAACAGCT AGCTGACACA CAAAGCAACG GCATTGCAAA 
    CTCATACAAC ATGGGACCAA CAGACATTGA GATTGCTGAC GAAGGCCATG 
    GTGCCATTTC CCTGAGAGAC ACCAGTCCTA TTTTAGACAC GATGGAGTCT 
    GGTAGGAGAG GCTGAAACAT GAGGCGACAA GTATCTTGAT GTTGTGTGGA 
    TTCTTCGGCC TTTCTGAGTT TTAAGTTCTA CAACATGACT AGTTCGTACG 
    GTTCCCCCAT TTCCATGTAC ATTGCGCAAG AATAGGTAGA GTTTTGCCAG 
    GTAGAATTGT GCTTGTCATC TCAGGTGATC GTCTCATCAT TGAGAGTTCC 
    TTGCAACTCG GTGCTGGCCG TTATATGCTG ACTTAAACTC GTTGTGGGTG 
    TTGGCTGTAA ATTACAGTGG GAGTTTGCAC TCTTAATCAT ATTCCACAGT 
    CCTCTTTGTT ACCCTGCTGA TGTACCTATC CTACGCTCTG GTTGTGCTGA 
    AATTGGTCCC AATGTAAATT ACAAATGTTG CTG

    Gene models with high sequence identity

    1. AT1G15080.1 [+] show detail - lipid phosphate phosphatase 2
      E-value: 7e-110; Score: 29.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Phosphatidic acid phosphatase type 2/haloperoxidase 2.7e-27
    HMMSmart Phosphatidic acid phosphatase type 2/haloperoxidase 8.8e-23
    HMMPanther PHOSPHATIDIC ACID PHOSPHATASE 1.2e-110
    HMMPanther LIPID PHOSPHATE PHOSPHATASE-RELATED 1.2e-110
    superfamily Phosphatidic acid phosphatase type 2/haloperoxidase 7.6e-37
    Gene3D Phosphatidic acid phosphatase/chloroperoxidase, N-terminal 0.000017

    See the detailed result >

    AT1G15080.1

    Model type
    Protein coding
    Short Description
    lipid phosphate phosphatase 2
    Curator Summary
    Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals.
    Computational Description
    lipid phosphate phosphatase 2 (LPP2); FUNCTIONS IN: acid phosphatase activity, phosphatidate phosphatase activity; INVOLVED IN: abscisic acid mediated signaling pathway; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.5); Has 2086 Blast hits to 2081 proteins in 377 species: Archae - 13; Bacteria - 320; Metazoa - 928; Fungi - 399; Plants - 199; Viruses - 3; Other Eukaryotes - 224 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR