K26811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26811

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26811

Determination of introduced cDNA(s)

  • J023081J06 - Rice Full-length cDNAs - Original: J023081J06

    full reading [+] show sequence

    Nucleotide sequence: J023081J06 - full reading
    GAAGAGAGAA AAAAAAGAGA GAATAATTTC CCCCTTTTCT CTCTTCCGTG 
    CCGGAGAATC GATGGAGATT AGGGCGCCGC CGACGAGCCT GAGGCTCGCG
    CCGCCGCCGC CGGCCTCCGC CAGCTTCCGC CGGACCGCGC TCAGGACCTC
    CTTCCTCAAC GGCAGCGTTT CACTTAGACT TATTCAAGTG CGCCAATCAA
    ATGTCAACAG GTTTAAGTGC AATGGCATAA GAAGTAACCT CCTTGATAGA
    TTTTCTAGGG TTGTAAAGTC CTATGCAAAT GCAGTCTTAA GTTCATTTGA
    AGACCCTGAA AAGATCCTAG ACCAGGCTGT TTTGGAAATG AATGACGATT
    TGACAAAGAT GCGGCAAGCC ACTGCACAGG TCTTGGCTTC TCAAAAGCGG
    CTTGAGAACA AATACAAAGC CGCTGAACAA GCTTCTGATG ATTGGTATCG
    GAGGGCTCAA CTTGCTCTTC AGAAGGGTGA TGAGGATCTT GCTCGTGAAG
    CCCTTAAGCG GCGTAAATCA TATGCTGACA ATGCAAGCTC CTTAAAGGCC
    CAGCTTGATC AGCAAAAGGG CGTGGTTGAG AACCTGGTAT CAAATACTCG
    GGTTCTTGAA AGCAAGATAG CAGAGGCTAA GCAAAAAAAA GATACCTTAA
    AAGCCCGTGC TCAATCAGCC AAGACTTCAA CAAAAGTGAG CGAAATGCTG
    GGGAATGTAA ATACTAGTGG TGCTCTTTCA GCATTTGAGA AAATGGAGGA
    AAAAGTTATG GCAATGGAGT CCCAAGCAGA GGCACTCGGT CAGTTGGCAA
    CTGATGATCT TGAAGGAAAG TTTGCATTGC TTGAGACTTC ATCGGTTGAT
    GATGACCTTG CACAAATGAA AAAGGAAATT TCTGGAAGCT CTTCGAAAGG
    AGAACTTCCT CCAGGTAGAA CGGCAGTCAG CAATTCAGGA GCAGCGCGCC
    CTTTCCGAGA CATCGAGATT GAGAATGAGC TAAATGAGCT GCGGAGGAAG
    GCCAATGAAT ATTAGATTAT GCAGTTTCCT TGTCCCTGCA CCAGGCCTGA
    CGAATCCTTT AGACTGAAGA ACCCCGGGAA GATATAGGAT GGTCTTCAGG
    TTTCTCCAAT GCCCCTTTGT TGAACCACCA GTGCAGCCTT TTTTCCCCCC
    AAGAGTATAA TGGATGCGTA AAAAAAATTC TACATTTTGC AGTGTGATTG
    ACATTGACTG TACAGTTAGC TACATAGTTA TGTAAAAGTC ATATTGCTCT
    TTCTAGAGCT GACTCTGCAT ATTTTAGTGG AAAGCCAAAA ATTTCCGTCC
    TCGTGC

    Gene models with high sequence identity

    1. AT1G65260.1 [+] show detail - plastid transcriptionally active 4
      E-value: 4e-110; Score: 395.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam PspA/IM30 4.5e-55

    See the detailed result >

    AT1G65260.1

    Model type
    Protein coding
    Short Description
    plastid transcriptionally active 4
    Curator Summary
    Encodes a protein required for thylakoid membrane formation.
    Computational Description
    plastid transcriptionally active 4 (PTAC4); INVOLVED IN: vesicle organization, thylakoid membrane organization; LOCATED IN: in 8 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PspA/IM30 (InterPro:IPR007157); Has 3123 Blast hits to 3108 proteins in 1139 species: Archae - 38; Bacteria - 2412; Metazoa - 160; Fungi - 68; Plants - 89; Viruses - 95; Other Eukaryotes - 261 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J013043F18 - Rice Full-length cDNAs - Original: J013043F18

    full reading [+] show sequence

    Nucleotide sequence: J013043F18 - full reading
    GGCCTAGAAC TTGCATCCCT GAACTGTTCT ACAATATAGA TCTCATGGAT 
    GAGATGGCTG CACGAACATG GTTGTGGTTG CTACTGTCCC CTCTCATCCT
    CCTACTGCTG CACTATGCTC TGGCCCTGCT AACTGCACGC CGAGCGAGGA
    AGAACCCCTT GCCACCTTCA CCTCCAGCCT TGCCATTCAT CGGGCACCTC
    CACCTCATCG GCGCCCTCCC TCACGTCTCC CTCTGCTGCC TCGCCACGAA
    GCATGCGCCC GACCTCATGT TCCTCCGACT TGGCACGTCG TTGCCGGTGC
    TCGTCGCTTC CTCGCCCTGT GCCGCCGAGG CCATCCTGCG CACGCATGAC
    GACGTGTTCG CGTCGCGGCC ACGCACCGTT CTAGCGGATA TCATCTTCTA
    CGGCTCGCGC GACATTGGCT TCGCACCGTA TGGCGAGGAT TGGCGGCAGG
    CAAGGAAGCT TGTGAACACG CACCTGCTGA GTGTCAACAA GGTGCAGTCG
    CTATGGCTTG CCCGTGAGGA GGAGGTGAAA ATTGTGATGG AGAAGATAAG
    CAAAGCGGCA TTCGCACGTG AAGCAGTGGA TATAGGCCAG ATTCTTTGCT
    CATTCACAAA CGATCTCGCA TGCCGTGTTG TGTCAAGGAA GTTAGTCGGG
    GATGACAGGC AGAAAAAGCT CCTCCAAGAG TTGGTTAATA AGACAATAAA
    GCTGCTTTCT ATCTTCAACG TGGAGGAGTA CTTTTCAATT TTAGCTCGGA
    TTGGCGTGAT TGGGAAGGTG ATGTGCGCAA GAGCTGAGAG GTTGAAAAAG
    AAGTGGGACA TGCTGCTGAA AAAGCTGATC GCCGACCATG AGAGCAAGTG
    CGATTCATAC TTAGTATGTG GCCGTAACAA AGATGACTTT GTGGACATTT
    TACTGTCTGT TAGGAAGGAG TATGGTCTCA CCGAAGAACA TGTCAAAGCT
    ATTCTTGAGG ACGTCTTTAT TGCGGGAACA CAGTCGTCTG CTCGGGTGAT
    CGAATTCACC TTTGCTGAGC TCATGCGGAA GCCACACATG CTCAAGAAGG
    TGCAGGATGA GGTGAGGGCT TGCATTCCCA ATGGACAAGC AATTGTTAGT
    GAAGTTCAAG TTAACAACAT GACTTACCTG AGAGCAGTTG TGAAGGAGGT
    ACTAAGGCTG CACCCTGTGG CACCACTCCT TGCGACACAC GTCTCCATGG
    CTGACTGCAA CATCAATGGG TATATGATCC CTTCAGGGAT GCGTGTCTTG
    GTCAACGCCT GGGCCATTGG TAGGGACGAA CGCTTCTGGT ATGATCCAGA
    GAAGTTCATG CCAGAAAGGT TTGTTGAAAG TGTGAATGGT TCTGCCACTG
    CGTCAGTCAA CTTTTGGGTG AATAACTATC AATACTTGCC ATTTGGTTCT
    GGAAGGAGAA TGTGCCTCGG GATGAACTTT GCCATGGCAG TTATCGAGAT
    CACACTAGCG AACCTTCTCT GGAAATTTGA TTGGGCGCTG CCTGCACATG
    CAATGGAGGT TGATATGTCA GAAGAGTTTG GGTTGTCGGT GCGTCTGAAA
    GAAAAGCTAT TGTTGGTTCC AAAGCAACAT GTGTAGCTGC TAGCAAGTAC
    TCGAAGGAAT TGAATTGTCC AACTTTAATG TGAGAAAGTC TACCATGACC
    TATGGGGGTC TACACTAATG TTAACCTCTG GACAAAGTCA TTATACACCG
    TTTCTCTATG CTTCAACCCT TGGAGGATCC AATTCTTATC ACAAAATATG
    TGTGTAACAA GTAATAATTT TTGCATGGT

    Gene models with high sequence identity

    1. AT3G48310.1 [+] show detail - cytochrome P450, family 71, subfamily A, polypeptide 22
      E-value: 9e-82; Score: 301.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cytochrome P450 3.3e-86
    HMMPanther CYTOCHROME P450, SUBFAMILY 71C 3.4e-184
    HMMPanther Cytochrome P450 3.4e-184
    superfamily Cytochrome P450 4.2e-110
    Gene3D Cytochrome P450 8.7e-104
    FPrintScan Cytochrome P450, E-class, group I 2.2e-31
    FPrintScan Cytochrome P450, E-class, group I 2.2e-31
    FPrintScan Cytochrome P450, E-class, group I 2.2e-31
    FPrintScan Cytochrome P450, E-class, group I 2.2e-31
    FPrintScan Cytochrome P450, E-class, group I 2.2e-31
    FPrintScan Cytochrome P450, E-class, group I 2.2e-31
    FPrintScan Cytochrome P450, E-class, group I 2.2e-31
    FPrintScan Cytochrome P450, C-terminal 3e-10
    FPrintScan Cytochrome P450, C-terminal 3e-10
    FPrintScan Cytochrome P450, C-terminal 3e-10
    FPrintScan Cytochrome P450, C-terminal 3e-10
    PatternScan Cytochrome P450, conserved site 0

    See the detailed result >

    AT3G48310.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 71, subfamily A, polypeptide 22
    Curator Summary
    putative cytochrome P450
    Computational Description
    "cytochrome P450, family 71, subfamily A, polypeptide 22" (CYP71A22); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily A, polypeptide 21 (TAIR:AT3G48320.1); Has 32713 Blast hits to 32486 proteins in 1636 species: Archae - 45; Bacteria - 3163; Metazoa - 11763; Fungi - 7101; Plants - 9557; Viruses - 3; Other Eukaryotes - 1081 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR