K26811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	desaturated green (PATO:0001272) (Cauline leaf::Color::pale)
	rosette leaf (PO:0000014)	desaturated green (PATO:0001272) (Rosette leaf::Color::pale) abnormal (PATO:0000460) (Rosette leaf::Others)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26811

Determination of introduced cDNA(s)

J023081J06 - Rice Full-length cDNAs - Original: J023081J06

full reading [+] show sequence

GAAGAGAGAA AAAAAAGAGA GAATAATTTC CCCCTTTTCT CTCTTCCGTG 
CCGGAGAATC GATGGAGATT AGGGCGCCGC CGACGAGCCT GAGGCTCGCG 
CCGCCGCCGC CGGCCTCCGC CAGCTTCCGC CGGACCGCGC TCAGGACCTC 
CTTCCTCAAC GGCAGCGTTT CACTTAGACT TATTCAAGTG CGCCAATCAA 
ATGTCAACAG GTTTAAGTGC AATGGCATAA GAAGTAACCT CCTTGATAGA 
TTTTCTAGGG TTGTAAAGTC CTATGCAAAT GCAGTCTTAA GTTCATTTGA 
AGACCCTGAA AAGATCCTAG ACCAGGCTGT TTTGGAAATG AATGACGATT 
TGACAAAGAT GCGGCAAGCC ACTGCACAGG TCTTGGCTTC TCAAAAGCGG 
CTTGAGAACA AATACAAAGC CGCTGAACAA GCTTCTGATG ATTGGTATCG 
GAGGGCTCAA CTTGCTCTTC AGAAGGGTGA TGAGGATCTT GCTCGTGAAG 
CCCTTAAGCG GCGTAAATCA TATGCTGACA ATGCAAGCTC CTTAAAGGCC 
CAGCTTGATC AGCAAAAGGG CGTGGTTGAG AACCTGGTAT CAAATACTCG 
GGTTCTTGAA AGCAAGATAG CAGAGGCTAA GCAAAAAAAA GATACCTTAA 
AAGCCCGTGC TCAATCAGCC AAGACTTCAA CAAAAGTGAG CGAAATGCTG 
GGGAATGTAA ATACTAGTGG TGCTCTTTCA GCATTTGAGA AAATGGAGGA 
AAAAGTTATG GCAATGGAGT CCCAAGCAGA GGCACTCGGT CAGTTGGCAA 
CTGATGATCT TGAAGGAAAG TTTGCATTGC TTGAGACTTC ATCGGTTGAT 
GATGACCTTG CACAAATGAA AAAGGAAATT TCTGGAAGCT CTTCGAAAGG 
AGAACTTCCT CCAGGTAGAA CGGCAGTCAG CAATTCAGGA GCAGCGCGCC 
CTTTCCGAGA CATCGAGATT GAGAATGAGC TAAATGAGCT GCGGAGGAAG 
GCCAATGAAT ATTAGATTAT GCAGTTTCCT TGTCCCTGCA CCAGGCCTGA 
CGAATCCTTT AGACTGAAGA ACCCCGGGAA GATATAGGAT GGTCTTCAGG 
TTTCTCCAAT GCCCCTTTGT TGAACCACCA GTGCAGCCTT TTTTCCCCCC 
AAGAGTATAA TGGATGCGTA AAAAAAATTC TACATTTTGC AGTGTGATTG 
ACATTGACTG TACAGTTAGC TACATAGTTA TGTAAAAGTC ATATTGCTCT 
TTCTAGAGCT GACTCTGCAT ATTTTAGTGG AAAGCCAAAA ATTTCCGTCC 
TCGTGC

Gene models with high sequence identity

AT1G65260.1 [+] show detail - plastid transcriptionally active 4
E-value: 4e-110; Score: 395.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPfam	PspA/IM30	4.5e-55

See the detailed result >

AT1G65260.1

Model type: Protein coding
Short Description: plastid transcriptionally active 4
Curator Summary: Encodes a protein required for thylakoid membrane formation.
Computational Description: plastid transcriptionally active 4 (PTAC4); INVOLVED IN: vesicle organization, thylakoid membrane organization; LOCATED IN: in 8 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PspA/IM30 (InterPro:IPR007157); Has 3123 Blast hits to 3108 proteins in 1139 species: Archae - 38; Bacteria - 2412; Metazoa - 160; Fungi - 68; Plants - 89; Viruses - 95; Other Eukaryotes - 261 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J013043F18 - Rice Full-length cDNAs - Original: J013043F18

full reading [+] show sequence

GGCCTAGAAC TTGCATCCCT GAACTGTTCT ACAATATAGA TCTCATGGAT 
GAGATGGCTG CACGAACATG GTTGTGGTTG CTACTGTCCC CTCTCATCCT 
CCTACTGCTG CACTATGCTC TGGCCCTGCT AACTGCACGC CGAGCGAGGA 
AGAACCCCTT GCCACCTTCA CCTCCAGCCT TGCCATTCAT CGGGCACCTC 
CACCTCATCG GCGCCCTCCC TCACGTCTCC CTCTGCTGCC TCGCCACGAA 
GCATGCGCCC GACCTCATGT TCCTCCGACT TGGCACGTCG TTGCCGGTGC 
TCGTCGCTTC CTCGCCCTGT GCCGCCGAGG CCATCCTGCG CACGCATGAC 
GACGTGTTCG CGTCGCGGCC ACGCACCGTT CTAGCGGATA TCATCTTCTA 
CGGCTCGCGC GACATTGGCT TCGCACCGTA TGGCGAGGAT TGGCGGCAGG 
CAAGGAAGCT TGTGAACACG CACCTGCTGA GTGTCAACAA GGTGCAGTCG 
CTATGGCTTG CCCGTGAGGA GGAGGTGAAA ATTGTGATGG AGAAGATAAG 
CAAAGCGGCA TTCGCACGTG AAGCAGTGGA TATAGGCCAG ATTCTTTGCT 
CATTCACAAA CGATCTCGCA TGCCGTGTTG TGTCAAGGAA GTTAGTCGGG 
GATGACAGGC AGAAAAAGCT CCTCCAAGAG TTGGTTAATA AGACAATAAA 
GCTGCTTTCT ATCTTCAACG TGGAGGAGTA CTTTTCAATT TTAGCTCGGA 
TTGGCGTGAT TGGGAAGGTG ATGTGCGCAA GAGCTGAGAG GTTGAAAAAG 
AAGTGGGACA TGCTGCTGAA AAAGCTGATC GCCGACCATG AGAGCAAGTG 
CGATTCATAC TTAGTATGTG GCCGTAACAA AGATGACTTT GTGGACATTT 
TACTGTCTGT TAGGAAGGAG TATGGTCTCA CCGAAGAACA TGTCAAAGCT 
ATTCTTGAGG ACGTCTTTAT TGCGGGAACA CAGTCGTCTG CTCGGGTGAT 
CGAATTCACC TTTGCTGAGC TCATGCGGAA GCCACACATG CTCAAGAAGG 
TGCAGGATGA GGTGAGGGCT TGCATTCCCA ATGGACAAGC AATTGTTAGT 
GAAGTTCAAG TTAACAACAT GACTTACCTG AGAGCAGTTG TGAAGGAGGT 
ACTAAGGCTG CACCCTGTGG CACCACTCCT TGCGACACAC GTCTCCATGG 
CTGACTGCAA CATCAATGGG TATATGATCC CTTCAGGGAT GCGTGTCTTG 
GTCAACGCCT GGGCCATTGG TAGGGACGAA CGCTTCTGGT ATGATCCAGA 
GAAGTTCATG CCAGAAAGGT TTGTTGAAAG TGTGAATGGT TCTGCCACTG 
CGTCAGTCAA CTTTTGGGTG AATAACTATC AATACTTGCC ATTTGGTTCT 
GGAAGGAGAA TGTGCCTCGG GATGAACTTT GCCATGGCAG TTATCGAGAT 
CACACTAGCG AACCTTCTCT GGAAATTTGA TTGGGCGCTG CCTGCACATG 
CAATGGAGGT TGATATGTCA GAAGAGTTTG GGTTGTCGGT GCGTCTGAAA 
GAAAAGCTAT TGTTGGTTCC AAAGCAACAT GTGTAGCTGC TAGCAAGTAC 
TCGAAGGAAT TGAATTGTCC AACTTTAATG TGAGAAAGTC TACCATGACC 
TATGGGGGTC TACACTAATG TTAACCTCTG GACAAAGTCA TTATACACCG 
TTTCTCTATG CTTCAACCCT TGGAGGATCC AATTCTTATC ACAAAATATG 
TGTGTAACAA GTAATAATTT TTGCATGGT

Gene models with high sequence identity

AT3G48310.1 [+] show detail - cytochrome P450, family 71, subfamily A, polypeptide 22
E-value: 9e-82; Score: 301.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Cytochrome P450	3.3e-86
HMMPanther	CYTOCHROME P450, SUBFAMILY 71C	3.4e-184
HMMPanther	Cytochrome P450	3.4e-184
superfamily	Cytochrome P450	4.2e-110
Gene3D	Cytochrome P450	8.7e-104
FPrintScan	Cytochrome P450, E-class, group I	2.2e-31
FPrintScan	Cytochrome P450, E-class, group I	2.2e-31
FPrintScan	Cytochrome P450, E-class, group I	2.2e-31
FPrintScan	Cytochrome P450, E-class, group I	2.2e-31
FPrintScan	Cytochrome P450, E-class, group I	2.2e-31
FPrintScan	Cytochrome P450, E-class, group I	2.2e-31
FPrintScan	Cytochrome P450, E-class, group I	2.2e-31
FPrintScan	Cytochrome P450, C-terminal	3e-10
FPrintScan	Cytochrome P450, C-terminal	3e-10
FPrintScan	Cytochrome P450, C-terminal	3e-10
FPrintScan	Cytochrome P450, C-terminal	3e-10
PatternScan	Cytochrome P450, conserved site	0

See the detailed result >

AT3G48310.1

Model type: Protein coding
Short Description: cytochrome P450, family 71, subfamily A, polypeptide 22
Curator Summary: putative cytochrome P450
Computational Description: "cytochrome P450, family 71, subfamily A, polypeptide 22" (CYP71A22); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily A, polypeptide 21 (TAIR:AT3G48320.1); Has 32713 Blast hits to 32486 proteins in 1636 species: Archae - 45; Bacteria - 3163; Metazoa - 11763; Fungi - 7101; Plants - 9557; Viruses - 3; Other Eukaryotes - 1081 (source: NCBI BLink).
Link: InterPro Scan - TAIR