K26818

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26818

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26818

Determination of introduced cDNA(s)

  • J023063O17 - Rice Full-length cDNAs - Original: J023063O17

    full reading [+] show sequence

    Nucleotide sequence: J023063O17 - full reading 
    GATCGATCTG CATGCGAAGT CCTGCAGCCT CCGTAGCAGA CACGTACAAC 
    GTACCGAGCA ACCTTAGCTA GTGGCGCCTG AAAATTATTA AGCGCTTCAA 
    GATGGCAAAG CATGGCGTTG CTTCCGTTTT AACACTGGCA TTGGTCCTTG 
    GAGTTGCGGC CATTCCTACA GTGGTGCAAT CTATCGGTTG TGCTACGGCG 
    TGATCGGGAA CAACCTGCCG TCGCCGAGCG ACGTCGTGCA GCTCTACAAG 
    TCCAACGGCA TCGACTCCAT GCGCATCTAC TTCCCAAGAA GCGACATCCT 
    CCAGGCCCTC AGCGGCTCAA GCATCGCCCT CACCATGGAC GTCGGCAACG 
    ATCAGCTCGG CTCCCTCGCC TCCGACCCCT CCGCCGCCGC CGCCTTCGTC 
    CAGAACAACA TCCAGGCGTT CCCGGGCGTC AACTTCCGCT ACATCACGGT 
    CGGCAACGAG GTTTCCGGCG GCGACACGCA GAACATCCTC CCGGCCATGC 
    AGAACATGAA CAGCGCCCTC TCCGCCGCCG GCCTCGGCAA CATCAAGGTG 
    TCGACGTCGG TGTCCCAGGG CGTGACCGCC GGCTTCCCGC CGTCCGCCGG 
    CACGTTCTCC GCCTCGCACA TGGGGCCCAT AGCTCAGTAC CTGGCGAGCA 
    CCGGCGCGCC GCTGCTCGCC AACGTCTACC CCTACTTCGC CTACGTGGGC 
    AACCAGGCCC AGATCGACAT CAACTACGCG CTCTTCACGT CGCCGGGCAC 
    GGTGGTGCAG GACGGCGGCA ACGCGTACCA GAACCTGTTC GACGCCATCG 
    TCGACACGTT CTACTCCGCG CTGGAGAGCG CCGGCGCCGG GAGCGTCCCG 
    ATCGTGGTGT CGGAGAGCGG GTGGCCGTCG GCCGGCGGCA CGGCGGCGAG 
    CGCCGGCAAC GCGCAGACGT ACAACCAGAA CCTGATCAAC CACGTCGGGC 
    AGGGGACGCC CAAGAGGCCC GGGAGCATCG AGACCTACAT TTTCGCCATG 
    TTCAACGAGA ACCAGAAGGG AGGCGACGAG ACGGAGAGGC ACTTCGGCCT 
    CTTCAACCCG GACCAGTCGC CGGCATACTC CATCAATTTC TAAGAAGATT 
    GTTCTGAGAA GAGATCGATC GATGATGAAT TAAACGTCGA TCGATATAGA 
    TATATACATA CACGCGTTCC ATATATAGTT TGGGTTTGAA TAAGCTTTCT 
    GCCTGCATAT TGCAAAGCTC AATGCATGCA TGTAACGGTG CAGAGACAAA 
    TAATATGAAC TTGAATAAAG TTTACCAGAC CTATTTTCGC GTAGC

    Gene models with high sequence identity

    1. AT3G57240.1 [+] show detail - beta-1,3-glucanase 3
      E-value: 1e-73; Score: 273.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 1.8e-110
    PatternScan Glycoside hydrolase, family 17 0
    Gene3D Glycoside hydrolase, subgroup, catalytic core 3.4e-118
    HMMPfam Glycoside hydrolase, family 17 4.5e-127

    See the detailed result >

    AT3G57240.1

    Model type
    Protein coding
    Short Description
    beta-1,3-glucanase 3
    Curator Summary
    encodes a member of glycosyl hydrolase family 17
    Computational Description
    "beta-1,3-glucanase 3" (BG3); FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to bacterium; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 2 (TAIR:AT3G57260.1); Has 2135 Blast hits to 2122 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 16; Plants - 2105; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR