K26839

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26839

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26839

Determination of introduced cDNA(s)

  • J023004E16 - Rice Full-length cDNAs - Original: J023004E16

    full reading [+] show sequence

    Nucleotide sequence: J023004E16 - full reading 
    GTCAAGCGAG CATTGAAGCA TACATATTCA GATTTGAGCA TCTCCGACAA 
    CTGAGTAATT TGAGCAAATG GGAGGTGCCC ACGGTGTCTG CTATGGCGTT 
    GTCGGCAACA ACCTCCCGTC GCGGAGCGAG GTCGTGCAGC TGTACAAGTC 
    GAAAGGCATC AGCGCGATGC GCATCTACTA CCCGGACCAG GAAGCCCTCG 
    CCGCGCTCCG CGGCAGCGGC ATCGCCGTCA TCGTCGACGT CGGCGACAAG 
    GGCGCGGTGG CCAACCTCGC CAACAACCCC TCCGCCGCCG CCGACTGGGT 
    CCGGAACAAC GTCCAGGCCT ACTGGCCGAG CGTCTTCATC CGGTACATCG 
    CCGTCGGCAA CGAGCTCGGC CCCGGCGACA TGGGGACCAT CCTCCCGGCC 
    ATGCAGAACT TGTACAACGC GCTCGTGTCC GCCGGCCTCT CGAACAGCAT 
    CAAGGTGTCG ACGGCGGTGA AGATGGACGT GATCACCAAC TCGTTCCCTC 
    CGTCGCACGG CGTGTTCCGC CCCGACCTTC AGCGGTTCAT TGTGCCCATC 
    GCGCAGTTCC TCGCCAACAC CATGTCGCCG CTGCTCGTCA ACGTGTACCC 
    CTACTTCGCC TACAGGGACA ACCCGCGCGA CATCCCGCTC AACTACGCCA 
    CGTTCCAGCC GGGCACCACG GTGAGGGACA ACGACAGCGG CCTCACCTAC 
    ACCAACCTCT TCAGCGCCAT GGTGGACGCC GTGTACGCCG CGCTGGAGAA 
    GGCCGGCGCG CCCGGCGTCC GCGTCGTCGT GTCGGAGAGC GGGTGGCCGT 
    CGGCGGGAGG GTTCGCGGCG AACGTGGAGA ACGCGAGGAA TCACAACCAG 
    GGCGTGATCG ACAACGTCAA GAACGGGACG CCGAAGCGGC CCGGGCAGCT 
    GGAGACGTAC GTGTTCGCCA TGTTCAACGA GAACCAGAAG CCCGGGGATG 
    AGACCGAGAG GCATTTTGGG CTCTTCAATC CTGACAAGAC GCCGGTCTAC 
    CCGATTACGT TTCCTCCGAA CTAGCGGCTG ACCATGTCAA TGCGAATAAG 
    GATTTCCTTA GACGAATAAT CCATGCTTAA ATAATTAATG TTGGTTGAAT 
    GTTAATGTAC TCTGTATGGC ACATTGTGCT TTGAAAATGC TACATGAATA 
    AAAGTTCCAA ATTTATTTCT TT

    Gene models with high sequence identity

    1. AT4G16260.1 [+] show detail - Glycosyl hydrolase superfamily protein
      E-value: 5e-84; Score: 308.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 1.6e-115
    HMMPfam Glycoside hydrolase, family 17 7.6e-138
    Gene3D Glycoside hydrolase, subgroup, catalytic core 6.7e-122
    PatternScan Glycoside hydrolase, family 17 0

    See the detailed result >

    AT4G16260.1

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase superfamily protein
    Computational Description
    Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR