K26840

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26840

Determination of introduced cDNA(s)

J033089K11 - Rice Full-length cDNAs - Original: J033089K11

full reading [+] show sequence

TGGGACCCAG GCAGATCTCC CCATCTCCGG GACGGGACCC GGCGCGCACG 
CGACCCGACG CGACGACGCA AGCAGCAGTG GTGGGTAAGG GTGGACTCGA 
CTCCGGCCGT CGCGATGGCG GCCGCCGGCT GGCCGCTCTC CTCCTCCGTC 
GCCGACCTCC TCCCCGCCTC CCTCTCGCTC ACCCTCCTCC TCGCCTCCCT 
CGTGGTCGTC GTGGTGCTGG CCGCCGCCGC CTTCTTCTTC GAGCACATCC 
GCAAGATCGG ATGCACGCAC TCGCTGGAGA GGACTGAAGT CTCGGCCGCT 
TTCTTCGAGG ACCCCAACTC GCTCAACAAG GTTCGTTGCC CTTCAATTTA 
CGACCCTGCT GAGAAGTACA TTTCGTTGAT CATCCCCGCT TATAACGAGG 
AGCACCGGCT TCCTGAGGCT CTCACAGAAA CACTCAACTA CCTGAAACAA 
CGTTCAGCTG TCGAGAAGTC ATTTACTTAC GAGGTCTTGA TCGTTGATGA 
TGGAAGTACT GATCATACAT CAAAAGTTGC CTTCGAGTTT GTAAGGAAAC 
ATAAAATTGA TAATGTTAGA GTTCTTCTAC TTGGGAGAAA CCATGGTAAA 
GGCGAAGCAG TCAGAAAAGG CATGCTCCAT TCACGTGGTG AACTGTTACT 
CATGCTTGAT GCTGATGGGG CAACTAAGGT TACTGATTTG GAAAAGCTTG 
AAGCCCAGGT TCGCGCATTG GCTAAAAAGG CTGAGTCCAG CCTAGCACCA 
TCTAGCAGTC CATCTCAGAG ACTATCTGAT GCTGAAATTG CTGTTTTTGG 
TTCACGTGCT CATCTGGAGA AGCAGGCTCT TGCCACAAGG AAATGGTATC 
GGAATTTTCT TATGAAAGGT TTCCACCTGG TAGTTTTATT GACAGCTGGT 
CCTGGGATCA GAGACACACA GTGTGGTTTC AAGATGTTTA CTCGAGCTGC 
TGCAAGGAAA CTTTTTACAA ATATCAGATT GAAGAGGTGG TGTTTTGATG 
TTGAGCTTGT ATACCTATGC AAGCATCTCA GGATCCCAAT GGCTGAAGTA 
TCTGTAAACT GGACTGAAAT ACCTGGATCC AAAGTGCGTA TGACAAGCAT 
CCTGCATATG GTATTTGAGC TCCTGCTGAT CAAAGTAGGT TATGGACTGA 
GCATATGGAA AATCTATTCA TAGACCATAT GCACGGTACG CTGACAATCA 
CCATAGCTTA TCATCACTGG ACTGTATACC AAGCTTAGTC TCACATGTAA 
AATTTTTCCA AGATTTTCAC CTAGAGAGAA TCCATTTGTG GCGCTGAGTA 
TTCCATCATA GATTTCAACA AAGATATAGA TCACGTGTAT TGTTCCTGCT

Gene models with high sequence identity

AT2G39630.1 [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
E-value: 5e-111; Score: 398.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	3.8e-18
HMMPanther	GLYCOSYLTRANSFERASE RELATED	1.8e-44
HMMPfam	Glycosyl transferase, family 2	1.7e-23
superfamily	Nucleotide-diphospho-sugar transferases	1.1e-23

See the detailed result >

AT2G39630.1

Model type: Protein coding
Short Description: Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary: Encodes a putative dolichyl-phosphate β-glucosyltransferase.
Computational Description: Nucleotide-diphospho-sugar transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT1G20575.1); Has 14679 Blast hits to 14665 proteins in 2386 species: Archae - 662; Bacteria - 10857; Metazoa - 271; Fungi - 260; Plants - 99; Viruses - 22; Other Eukaryotes - 2508 (source: NCBI BLink).
Link: InterPro Scan - TAIR