K26848

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26848

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26848

Determination of introduced cDNA(s)

  • J033028G17 - Rice Full-length cDNAs - Original: J033028G17

    full reading [+] show sequence

    Nucleotide sequence: J033028G17 - full reading 
    GCGTCTCGTC TTTCCCATCT CGCGGCGGCT GCGTCTCTCT CTCGATCTCT 
    CGGCGGCGGC CATGGCGGAC TACCACTTCG TGTACAAGGA CGTGGAGGGG 
    GCGAGCACGG AGTGGGACGA CATCCAGCGA CGCCTGGGGA ACCTGCCGCC 
    GAAGCCGGAG CCGTTCAAGC CGCCGGCGTA CGCGCCCAAG GTCGACGCCG 
    ACGAGCAGCC CAAGTCCAAG GAATGGCTCG ACGAGCGGGA GCCCGACGAG 
    CTGGAGGATC TCGAGGACGA CCTCGACGAC GACCGCTTCC TCGAGCAGTA 
    TAGGAGGATG AGGCTTGCAG AGCTCAGGGA GGCAGCAAAG GCCGCGAAAT 
    TCGGCTCTAT TGTGCCTATC ACTGGCTCTG ATTTTGTCCG AGAGGTCTCC 
    CAGGCCCCAT CCGATGTCTG GGTTGTGGTC TTCCTCTACA AGGATGGAAT 
    ACCAGAATGT GGGTTGCTTC AGACTTGTCT GGATGAATTG GCTACAAGAT 
    ACCCAGCAAC TAAGTTTGTT AAAATCATCT CTACAGACTG CATTCCCAAC 
    TACCCAGATC GAAATGTCCC TACTATACTT GTGTACAATA ACAGTGCTGT 
    TAAAGGGACT TATGTCGGTC TGCAGAAGTT TGGTGGAAAA AGGTGCACAC 
    CTGAGTCTGT TGCATTGGCC CTTTGCCAGT CAGAGCCAGT CCTGAATGAT 
    GGGCAGAGCG GCGGTGATTC ATCCCGGGAC AATGTCATAG AAGGCGTTCG 
    CAGGAAGTTC ATCGAAAAGG TTGTCGCCCA GCATGAAGAG CGGGAGGAAG 
    ATGACGATAG TGACTAAACA TACTCTCCTA GTATGTCTCA GTTCACTGAT 
    ACTATTGATG ATGTGGGTCA AGTTTTGCCT GAGATCACTA ATTGTACTCA 
    TATTTGGTTC TGTTCTGAAA ATGCTGAATT TTCTCTCTAC GATGAGCTGC 
    AAAAACTCAG GTTTAGCAGC AGCTTGTTGT GGTACATGTG GTAAATTGGT 
    AATGTATCCT GGTGTTCCTT GTATTGATTG TGGCACTTTC AGCTAAAATG 
    AAAATGGATA AATTTCATGG

    Gene models with high sequence identity

    1. AT5G14240.1 [+] show detail - Thioredoxin superfamily protein
      E-value: 3e-68; Score: 255.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Phosducin 1e-15
    HMMPanther PHOSDUCIN-LIKE PROTEIN 2, 3 (VIRAL IAP-ASSOCI 1.6e-87
    HMMPanther PHOSDUCIN-RELATED 1.6e-87
    Gene3D Thioredoxin fold 2.9e-32
    superfamily Thioredoxin-like fold 6.3e-42

    See the detailed result >

    AT5G14240.1

    Model type
    Protein coding
    Short Description
    Thioredoxin superfamily protein
    Computational Description
    Thioredoxin superfamily protein; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); Has 1075 Blast hits to 1075 proteins in 388 species: Archae - 0; Bacteria - 2; Metazoa - 646; Fungi - 206; Plants - 103; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR