K26918

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26918

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26918

Determination of introduced cDNA(s)

  • J023090G17 - Rice Full-length cDNAs - Original: J023090G17

    full reading [+] show sequence

    Nucleotide sequence: J023090G17 - full reading 
    GTAGAAACAG ATCCAACCAA TTCGCTCGCT TAAGCCGCCG GCAAATCAAC 
    CCAACCCCAA GGGTTTTTCG TGTGGTGTTG AGGATCCATG GCTAGGAAGA 
    TGCTCAAGGA CGAGGAGGTG GAGGTGGCCG TCACCGACGG CGGGAGCTAC 
    GACTACGACC TGTTCGTGAT CGGCGCCGGG AGCGGCGGCG TCCGGGGCTC 
    TCGCACCTCC GCGTCCTTCG GGGCTAAGGT TGCGATTTGC GAGCTCCCGT 
    TCCATCCCAT CAGCTCGGAT TGGCAAGGAG GGCATGGTGG GACGTGTGTG 
    ATACGTGGTT GTGTGCCTAA AAAGATACTG GTGTATGGTT CATCTTTCCG 
    CGGAGAATTT GAGGATGCAA AGAATTTTGG GTGGGAAATC AATGGGGACA 
    TTAACTTCAA CTGGAAAAGG CTGCTGGAAA ATAAGACTCA AGAAATTGTT 
    AGACTAAATG GAGTATACCA GAGGATTCTT GGCAATTCTG GTGTGACAAT 
    GATTGAAGGG GCAGGCAGTT TGGTTGATGC TCATACAGTT GAAGTCACAA 
    AGCCAGATGG TTCAAAGCAA AGATATACAG CAAAGCACAT ATTGATAGCA 
    ACTGGTAGCC GAGCTCAACG TGTCAACATT CCTGGGAAGG AGTTAGCTAT 
    TACTTCAGAT GAGGCCTTAA GTTTGGAGGA GCTACCAAAA CGTGCTGTAA 
    TCCTTGGTGG CGGATATATT GCTGTTGAAT TTGCTTCTAT ATGGAAAGGG 
    ATGGGTGCGC ACGTAGACTT GTTTTATCGA AAAGAGCTTC CTCTAAGAGG 
    TTTCGATGAT GAGATGAGGA CGGTTGTTGC AAGTAACCTT GAGGGAAGGG 
    GAATCAGATT ACATCCAGGG ACAAATCTAT CTGAGTTGAG TAAAACAGCC 
    GATGGCATAA AAGTTGTCAC TGACAAAGGA GAGGAGATCA TTGCAGATGT 
    TGTTCTGTTT GCTACAGGTC GCACACCAAA CTCCCAGAGG TTGAACTTGG 
    AAGCTGCTGG TGTTGAAGTT GATAATATTG GAGCTATAAA GGTTGATGAT 
    TATTCTCGTA CATCAGTCCC AAATATATGG GCTGTGGGTG ATGTAACGAA 
    CCGGATAAAT TTAACACCTG TTGCACTGAT GGAGGCTACC TGCTTTTCTA 
    AAACTGTGTT TGGTGGCCAG CCAACTAAAC CTGATTACAG AGATGTACCT 
    TGTGCTGTTT TCTCCATCCC ACCACTATCA GTAGTGGGCT TGAGTGAACA 
    GCAGGCTTTG GGGGAAGCCA AGAGCGATGT TCTTGTTTAC ACTTCCAGCT 
    TCAACCCAAT GAAGAACAGC ATATCCAAAC GGCAGGAGAA GACCGTCATG 
    AAACTGGTGG TTGATTCAGA GACTGATAAA GTACTTGGTG CATCAATGTG 
    TGGACCAGAT GCACCAGAGA TTATCCAGGG TATGGCTGTA GCGCTGAAGT 
    GTGGAGCCAC CAAGGCGACC TTTGACAGCA CTGTTGGTAT TCACCCGTCT 
    GCTGCTGAAG AGTTTGTGAC AATGCGGACC TTGACCAGGC GCGTGAGCCC 
    ATCATCCAAG CCAAAGACAA ACTTGTAGGC AAGATGAGTA ATTTTGGATA 
    AAGAAACATA TATACCCGTT TTGATTTATA TTTTGTGGCA AAGTGTACTC 
    TGGTTTGCAT CTGGTAATTT CACGTTAGGG ATTCTACCTG GAACGGTAAA 
    AAGGAGACAA TGTATACTTG ATTGAAATAA GGTTTCTGCA TATCAGCCTG 
    TACAGAGAGT AAAACTTCTG CGTTTTTCTG ATCCAAATAA GCGGGCGGGA 
    CATCATTCGT TCTGCCTGCA GACAAACTCT CTGAATATC

    Gene models with high sequence identity

    1. AT3G24170.3 [+] show detail - glutathione-disulfide reductase
      E-value: 0; Score: 729.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Pyridine nucleotide-disulphide oxidoreductase, class I, active site 0
    FPrintScan PNDRDTASEI 5.5e-61
    FPrintScan PNDRDTASEI 5.5e-61
    FPrintScan PNDRDTASEI 5.5e-61
    FPrintScan PNDRDTASEI 5.5e-61
    FPrintScan PNDRDTASEI 5.5e-61
    FPrintScan PNDRDTASEI 5.5e-61
    FPrintScan PNDRDTASEI 5.5e-61
    FPrintScan PNDRDTASEI 5.5e-61
    FPrintScan PNDRDTASEI 5.5e-61
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 1.1e-28
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 1.1e-28
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 1.1e-28
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 1.1e-28
    FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 1.1e-28
    FPrintScan TRYPANRDTASE 1.7e-05
    FPrintScan TRYPANRDTASE 1.7e-05
    FPrintScan TRYPANRDTASE 1.7e-05
    HMMPfam FAD-dependent pyridine nucleotide-disulphide oxidoreductase 9.1e-47
    HMMPfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation 7e-31
    HMMPfam Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region 5.4e-18
    superfamily FAD/NAD(P)-binding domain 1.6e-69
    superfamily FAD/NAD-linked reductase, dimerisation 2.1e-30
    HMMPanther GLUTATHIONE REDUCTASE 1.9e-268
    HMMPanther DISULFIDE OXIDOREDUCTASE 1.9e-268
    Gene3D no description 2.9e-67
    Gene3D Pyridine nucleotide-disulphide oxidoreductase, dimerisation 7.3e-32
    HMMTigr Glutathione-disulphide reductase 0

    See the detailed result >

    AT3G24170.3

    Model type
    Protein coding
    Short Description
    glutathione-disulfide reductase
    Curator Summary
    Encodes a cytosolic glutathione reductase.
    Computational Description
    glutathione-disulfide reductase (GR1); FUNCTIONS IN: NADP or NADPH binding, glutathione-disulfide reductase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction, glutathione metabolic process, cell redox homeostasis; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Glutathione-disulphide reductase (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: glutathione reductase (TAIR:AT3G54660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR