K26926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26926

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26926

Determination of introduced cDNA(s)

  • J023128A15 - Rice Full-length cDNAs - Original: J023128A15

    full reading [+] show sequence

    Nucleotide sequence: J023128A15 - full reading 
    TTGGGTTGGA GGATATCATG GACAATCAAG TGATATGTAC AATCTACAAG 
    CTTCCGGATT CTCATAAGCA CATCGCTCGT CCACCTGTTG GTGTAATCAT 
    ACCCAAGAAG ACTGTTGAAG CTACTGACCT GAAACCACCA CCTGTGCTAT 
    GGCATGAAGA CAGTGGTAGG AGGCCTCATG ATAATAACAA CAGGAGGCCT 
    TATGAAAACA GCAACAGGCA AAACCCAGCT GGAGCAATAT CTGGCCGCCA 
    ACTTGGGGAA GCTGCCCACC GACTTGTGGT GAACAGCTTG AATGCTCGGA 
    GTGGCGGACA ATACAATACC CCATCGATGC CATATCAAAC CATAATGAAT 
    GGCATGCCTT ATCCAAATGG GATTCCACCA AGGATGGAGC AGCCTGCTCC 
    TGGCTGGCAT GTTCCTGGTG ATCTACCAAA TGGTCAGGTA CCACCAGCTT 
    ATGCATCATC ATCAGGTCAT TATCAGAACG ATAGGTCTGG GCCTTCTCAG 
    TATGGACGAG ATAACCATGG AAGGTACCCA TATGCAAGAG ACAACCACCA 
    TGATTCAAGA GGAAGGGTTC CACCATACCA TCAGAGCGGT GGAAACTCGT 
    ATCAATCACA TTCTGCTCCA TCAGCAGGTC CTGGACGGTA TGCGCAACCC 
    CCACCATATG CTGGGGGGTA TGGTAGGAGC TACCAGCCTG CACCGTATGG 
    AGGTGGTCAG CAGTGGCAGC AGCAGCAGCA ACAACCTTAT GGCTCCTATG 
    CTGGGTCAGG GCCTTATGGG GGTGGGGCAC CTCCTGCAAG GCCTAATTCA 
    CGACCACAGC AGTCGCAGAA CCGTTACAAT ACCTTAGATA GGAATTCTAA 
    CAGGAGACCT CCACCAGGTC ATGGGCGACA CTAAGCCCAA CCTCTGTTTG 
    TTGTACCTGT GGTTTTGTTG TTAGAAAACC TGCGTACTAA AATAGAGAAC 
    CTCAGCCTAG TAAAACAGAG AACCTCAGCT TAGAGATATA TATAGAGCAA 
    TTTGCATAGT CTCGTGATCG ACAAGCTGTT ATAGCATCAA AGGTTCTAAG 
    AGGCATGTGT TGTACAATAG AATTGTCAGT TCATCAGATA CTGGTGGCTG 
    ACTGCCGTTT TTCATTTGTG GCACTCATTA TTTTAGCCCC CTAAGGTTGG 
    GAATATGTTT AACAAGTTTT GTATTTTTAA GATAATAATG TTCTAGGTTA 
    AATTTCAGTT TTGGTGGATA TATGTCAAAA TCTTGTATTC TTTTCTTATT 
    TATAATGGAA TTGTGGTTTT CCCTC

    Gene models with high sequence identity

    1. AT1G75660.1 [+] show detail - 5'-3' exoribonuclease 3
      E-value: 7e-38; Score: 155.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G75660.1

    Model type
    Protein coding
    Short Description
    5'-3' exoribonuclease 3
    Curator Summary
    Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.
    Computational Description
    5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR