K26945

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26945

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26945

Determination of introduced cDNA(s)

  • J023118K01 - Rice Full-length cDNAs - Original: J023118K01

    full reading [+] show sequence

    Nucleotide sequence: J023118K01 - full reading
    AATGGATCCT AGCCACTACA AGGGCAACCA TACATATGTT CCAGTCTCTC 
    AGAAGGGATA TTGGCAGTTT GAGATGGGCG ATGTCCTGAT TGGGGGAAAG
    ACCACAGGAT TTTGTGCTAG CGGTTGTTCA GCTATAGCAG ACTCTGGAAC
    ATCATTGCTT GCTGGCCCCA CAGCCATAAT CACTGAAATC AATGAGAAGA
    TCGGTGCTAC TGGGGTAGTC AGCCAAGAAT GCAAGACAGT TGTTTCTCAA
    TATGGACAAC AGATCCTAGA TCTGTTGCTT GCTGAGACAC AGCCATCAAA
    AATCTGCTCT CAGGTTGGTC TGTGTACTTT TGATGGGAAG CATGGTGTTA
    GTGCTGGAAT TAAGAGCGTA GTAGATGATG AAGCTGGGGA ATCGAATGGT
    CTCCAAAGTG GTCCCATGTG CAATGCCTGT GAGATGGCTG TTGTATGGAT
    GCAGAACCAA CTTGCACAGA ACAAGACTCA GGATCTCATC TTGAACTACA
    TTAATCAGCT CTGTGACAAG CTCCCAAGTC CAATGGGAGA ATCATCTGTG
    GACTGTGGCA GCCTTGCATC CATGCCTGAG ATTTCATTCA CCATTGGAGG
    CAAAAAGTTT GCACTGAAGC CAGAAGAGTA TATTCTGAAG GTTGGTGAAG
    GAGCTGCTGC CCAGTGCATC AGTGGATTCA CAGCCATGGA CATCCCTCCT
    CCCCGTGGTC CTCTCTGGAT CCTGGGTGAC GTTTTCATGG GTGCCTACCA
    TACCGTGTTC GACTACGGCA AGGTGAGGGT TAGCTTCGCG AAGTCGGCCT
    AAACGTGTTG TTGTCACGTT CCTAATGACG AGGTGGACGC ATACGCCGAG
    AGAAGAAGAC CGTAGCTTTT AACTAGCGTA TTTATCCGGC GATGTGTGTA
    TATATGCATG CTACATAACA TGTTTATGTT TTCCAAGGCC TGAGATGGCG
    CCCGTCTATT TTAGCTTGGC AAGAATATCT CGGACCAGTC TCTGTTCGAA
    TTCTCGTACT GATATGTGAA CTTCTGATAA CATGTGCACT GTGTTTTGTG
    ACTGAATTGC TAGTCAGTCC GAAGGTTAAT TATCCC

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 1e-114; Score: 409.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Peptidase aspartic 8.9e-45
    superfamily Saposin-like 4.3e-29
    PatternScan Peptidase aspartic, active site 0
    Gene3D Peptidase aspartic, catalytic 6.4e-54
    HMMPfam Peptidase A1 2.3e-52
    HMMPfam Saposin-like type B, 1 0.0000000000000016
    HMMPfam Saposin-like type B, 2 0.000000000000016
    HMMSmart Saposin B 0.0063
    ProfileScan Saposin B 13.464
    ProfileScan Saposin B 12.419
    FPrintScan Saposin 0.000000033
    FPrintScan Saposin 0.000000033
    HMMPanther ASPARTIC PROTEINASE-RELATED 4.8e-109
    HMMPanther Peptidase A1 4.8e-109

    See the detailed result >

    AT1G11910.1

    Model type
    Protein coding
    Short Description
    aspartic proteinase A1
    Curator Summary
    Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
    Computational Description
    aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR