K27001

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27001

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27001

Determination of introduced cDNA(s)

J023108B21 - Rice Full-length cDNAs - Original: J023108B21

full reading [+] show sequence

GTGTACACCC CTATCTCACC CACCACCATC CCAAGGCGGC GCGACGACCC 
ATCTCGCCGC CGCGAATTCT CTCTCCGGCG AACTCCAACT CGAACCCTCC 
CTCCGCCGAC TCCGCTCACG AGACCTAAAC CCTCCTTCCC TCTCCTCTCG 
TCTCGTTCCC ACCACCATGC TGGGCATCGC GAGGAGGCGC CTCGGATCCG 
GATGCGCGCT GGGGCAACTC ATGCAGGCGC TCCGACCGGC CGCCGCCGCC 
GCCGCGGCGA GGACCTACTC CGCCGCCGCC AAGGAGATGA CTGTGCGTGA 
AGCATTGAAT TCTGCCCTTG ATGAGGAGAT GTCTGCTGAC CCTTCTGTTT 
TCTTGATGGG AGAAGAGGTT GGAGAATACC AAGGGGCATA TAAGATATCG 
AAGGGTTTGT TAGACAAATA TGGCCCTGAT AGGGTTCTTG ACACACCAAT 
CACAGAGGCT GGTTTTACTG GAATTGGTGT TGGTGCTGCC TATCAAGGTC 
TTCGCCCTGT GGTTGAGTTC ATGACATTTA ACTTCTCTAT GCAGGCAATT 
GATCACATCA TAAATTCAGC TGCCAAGTCG AACTACATGT CAGCTGGTCA 
GATAAACGTT CCTATTGTTT TTAGAGGGCC AAACGGTGCT GCTGCTGGTG 
TTGGTGCTCA GCACTCTCAG TGTTATGCGG CTTGGTATGC GCATGTACCA 
GGATTGAAGG TCCTAACTCC TTATTCTGCA GAAGATGCTC GGGGCTTGCT 
AAAAGCAGCA ATCAGGGATC CAGACCCTGT TGTTTTCTTG GAAAATGAAC 
TGCTCTATGG TGAATCATTC CCTGTTTCTG CGGAAGTTCT TGATTCTAGC 
TTCTGTCTAC CGATTGGGAA GGCTAAGATA GAGCAAGAAG GAAAAGATGT 
TACAATTACC GCATTCTCCA AGATGGTCGG ATATGCTCTT CAGGCTGCAG 
AGATACTTTC CAAGGAGGGA ATCAGTGCTG AGGTGATCAA TCTTCGGTCA 
ATTAGGCCAT TGGATAGAGC TACTATCAAT GCATCAGTTA GGAAAACCAA 
CAGATTGGTA ACCCTTGAAG AAGGATTTCC ACAACATGGG GTTGGCGCTG 
AAATATGCAT GTCTGTTGTA GAGGACAGCT TTGAATATCT TGATGCGCCA 
GTTGAGAGGA TTGCTGGAGC TGATGTGCCC ATGCCCTACG CTGCCAACCT 
TGAGAGGATG GCTGTTCCAC AGGTTGAGGA CATTGTTCGT GCAGCGAAGC 
GAGCCTGCTA CAGAGCAGTA CCAATGGCAG CAACAGCCTA ATTCAGTGAC 
AGTTTTTGTT TCTCCATCTT GTCTTCTTCC CAATGGCCAG GAGTATGTAC 
CACAGCATAA TGGTGTCTTC CCAAGTCTCA ACTAGTGTAA GCTGATTTTG 
TAGATCCACC ATGAGGTGTC AATCCCCTTC TTTCTTTAGT CGCAGTCGGA 
TGGCTGCATC CGTTCATAGT CCAAACTGAA TATACACATT TGAACCATGC 
GACTTCTGGA GATTTTACAT GACCGGTTGA TGTCAATAAC ATGTATGTAA 
TGGAGCTCCA TAAGTCGGCA AACCAAACCC CCATTAGATT CAATGTTTGT 
TCGTCCATGC CTCTGAATTG AATGCACTGG ACTCTACAAG TTCATGGTCC 
TGTTATCC

Gene models with high sequence identity

AT5G50850.1 [+] show detail - Transketolase family protein
E-value: 2e-169; Score: 592.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Transketolase-like, pyrimidine-binding domain	9.8e-64
superfamily	Thiamin diphosphate-binding fold (THDP-bindin	7.4e-71
superfamily	Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II	5.1e-47
HMMPanther	PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUB	2.3e-208
HMMPanther	DEHYDROGENASE RELATED	2.3e-208
Gene3D	no description	5.2e-79
Gene3D	Transketolase-like, C-terminal	3.6e-42
HMMPfam	Transketolase-like, pyrimidine-binding domain	2.9e-48
HMMPfam	Transketolase, C-terminal	3.6e-40

See the detailed result >

AT5G50850.1

Model type: Protein coding
Short Description: Transketolase family protein
Computational Description: MACCI-BOU (MAB1); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity; INVOLVED IN: defense response to bacterium; LOCATED IN: mitochondrion, nucleolus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase E1 beta (TAIR:AT1G30120.1); Has 17839 Blast hits to 17830 proteins in 2804 species: Archae - 215; Bacteria - 11375; Metazoa - 619; Fungi - 227; Plants - 405; Viruses - 0; Other Eukaryotes - 4998 (source: NCBI BLink).
Link: InterPro Scan - TAIR