K27006

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27006

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27006

Determination of introduced cDNA(s)

J033094K08 - Rice Full-length cDNAs - Original: J033094K08

full reading [+] show sequence

CCCCTTGACC CCTTCCTCTC GTCGTCGTCG GTGCGGCGCC GCCAGGGAAA 
ATGGAGTCAT CGAGGCTGCG GAGGCGGCGG CGCTGCCGCG TCCGGTGCCT 
CCTCGCTCCT CCCGTTGCCG CCCGTGCGCA GCAGCTGCAG CGCGTCGCAT 
ATTTCTCCAA ACCCACGCAG ATCTCCGCTT TTTCCCGGCG GCAACCACGC 
CGCGGCAAGC AGTTCTAGTT ATAAGCCTGT GCAGAATATG CAGAAGAAAG 
AAGTACAAGA TACACGACGC AGGAGATTTG CAGCAGGAAA ACATGTTCTC 
TGTCTTAAAC TTTGATGGTG GAAATGCATA CGAGCAAATT ATTGAAGCGA 
CGGAGAACTT TAGTGAAAAA TATTGCATTG GAGCAGGTGG TTATGCGTCT 
GTCTATGTAG CTAAATTATC AAATGGTAAA AATTTTGCAG TCAAGAAGAT 
AAATGCAACA GAGAATGGCC GTTTGATAAA CGAGCAAATG TTCTATCGTG 
AAATAGAGGC CACAATGCAA ATACGCCACA AGAACATTGT AAAAGTCTTT 
GGCTACTGCT GTACAGCACG AGATAAGTTT ATTGTCTACA AGTATATGAA 
AGGAGGAAAC TTGTTGACAG CTCTCAAGTC CTACAGAAGT GCAAGCGAGT 
TGGATTGGAA GCGCAGGTTA TGTATTGCTC AGGATGTTGC TCATGCCCTA 
TCTTACTTGC ATCACGACTG TTCAGATCCT ATAGTCCATC GAGATGTAAC 
AACCAAAAAC ATTCTGCTAG ATCTGGAGTT CAGAGCTTGT TTATCAGACT 
TTGGGATAGC TAAAATACTG GATGCTGATG GATCAGGACA CACAAGGCTC 
GCTGGTACAA AAGGATATCT TGCACCAGAG CTGGCATACA CTACGAAGGT 
GACAGAGAAA TGTGACGTTT ATAGCTTCGG GGTGGTAGTT CTTGAGCTGT 
TGATGGGATC TCACCCTGGA GACTTTGTTT CGTCGATCTC ATGCCCTAGC 
AAGAAAAGCA CACCGATGAA GGATTTGTTG GACACCAGAC TCCCGCCTCC 
AGCAGGTGAA GTTGCAAGCG AGATATTTGG ATTGATCACG GTTGCTATAC 
AGTGCCTTCA CCCCAATCCA TCAACTCGTC CGACGATGCC ATCCGCAATT 
CATTTGTTCT CCAAGTTTTC TAGGGCGGTT GATCTTGATT ATCTGCATGC 
TGACATCATG GAGTTCTGCC TTCTTTGAAC CTTGACCTTT GTATTCATTT 
TCTACTTGTG GAATGTTCCC GAGGATAAAG GGAACTACAC AGGTATTCTA 
CATCTTATGC CTTTGTTGAT GTGGGAAGGA AGGGAGCTAA TAGGTGTGTT 
GTTTTACAAG AATTGCTATC

Gene models with high sequence identity

AT4G08850.1 [+] show detail - Leucine-rich repeat receptor-like protein kinase family protein
E-value: 6e-78; Score: 288.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PROTEIN SERINE/THREONINE KINASE-RELATED	5.5e-84
HMMPanther	SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE	5.5e-84
PatternScan	Protein kinase, ATP binding site	0
PatternScan	Tyrosine-protein kinase, active site	0
ProfileScan	Protein kinase, catalytic domain	37.22
HMMPfam	Serine/threonine-protein kinase-like domain	6e-47
Gene3D	no description	4.8e-15
Gene3D	no description	2.8e-45
HMMSmart	Serine/threonine-protein kinase domain	6e-37
HMMSmart	Tyrosine-protein kinase, catalytic domain	9e-18
superfamily	Protein kinase-like domain	1.1e-70

See the detailed result >

AT4G08850.1

Model type: Protein coding
Short Description: Leucine-rich repeat receptor-like protein kinase family protein
Computational Description: Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase family protein with leucine-rich repeat domain (TAIR:AT1G35710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR