K27015

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
T1	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27015

Determination of introduced cDNA(s)

J013134G12 - Rice Full-length cDNAs - Original: J013134G12

full reading [+] show sequence

GAGCAACTCA TCAGCACACT CACTCTGCAA CAAGCATGCA GACGCCAACC 
ATGTCGACGT CCATGGCCAC GCCGGCGAAG CTCCCCTCAC CGCCGTCGCT 
GCCGATAGCG AGGCAATGCT GCTGCCACCT GCTGCAGCTA GGGCGGCGCG 
GCGGCGCGGG CGTGGCGCGG GCGTCGGCGA AGAAGAAGAA CCCGTGGCTG 
GACCCGTTCG ACGACGGGCC CGACGACGAG TTCGACTACC GCGGCGCGTT 
CTCGGGGGGG AAGCAGGAGG AGGACCCGCG GCCGCCGGAG GACCCGGCGA 
ACCCGTACGG GTTCCTGCGG TTCCCGGCGG GGTACAACCC GGAGCTGGAT 
AGCCTGGCAT CCAAGGTGCG GCGCGACGTG CGGCGGGCGT GCTGCGTGGT 
GTCCGGCGGG GTGTACGAGA ACGTGCTCTT CTTCCCGGTG GTGCAGCTGC 
TGCGGGACAG GTACCCCGGG GTGGTGGTGG ACGTGGTGGC GTCGGCGAGG 
GGGAAGCAGG TGTACGAGAT GTGCAAGAAC GTCAGGTACG CCGACGTCTA 
CGACCCCGAC GACGACTGGC CCGAGCCCGC CGAGTACACC CACCAGCTCG 
GCGTGCTCAA GAACAGGTAC TATGATCTGA TCATATCGAC CAAGTTGGCC 
GGGATAGGGC ACGCGCTCTT CCTCTTCATG TCGTCGGCCC GCGACAAGGT 
CGGCTATGTT TACCCCAACG TCAACAGCGC CGGCGCCGGG CTGTTCCTCA 
CCGAGATGTT CCGGCCGCCG ACCACCAACC TCGCCGACAG CGGCTACAAC 
ATGTATCAGG ACATGTTGGA GTGGATTGGG CGGCCAGCGA AGGGTGTGCC 
GGAGCACCCG GTACCGCCGT TGCGGGTGTC CATCTCCAAG AAGCTCCGAG 
CGTTCGTGGA GGACAAATAT AGCCGTGCCG GCGTCGAGAA GGGCAAGTTC 
GTCGTCGTCC ACGGCATCGC CTCCGACTCC TTCGCCAACA TGAGGTCGAG 
GGGGGACGAT GACTGCCTCC TCCCTCTCGA GCATTGGGCT GAGATCGCCA 
AGGAGATCAG CTCTGAAGAC AATGGTCTGA AGCCTCTGTT TGTGATCCCT 
CATCAGAAGC ACAGGGAAGA GGTTGAGGAG ACTGTGGGGA AGGACACCAA 
TATCCTGTTC ATCACCACTC CTGGCCAACT CACCTGCCTC ATCAACGACT 
CCGTCGGCGT CGTCGCGACC AACACCGCCG CCGTCCAGCT CGCCAACGCC 
AGGGACAGGC CATGCGTGGC TCTCTTCTCA TCCAAGGAGA AGGCGAGGCT 
GTTCCTGCCG TACTTGGAGG AGAGGAAGGG CTGCACCGTC GTCGCGTCGG 
AGACCGGGAA GCTGATCGAC ATCGACGTCG AGGCCGTCAA GAAGGCGGTG 
AAGGAGTTCA AGGCCGCCCC AAGCGTTGCA TTGGCTCAAA CATGATGAAG 
ACCATCATCT TCTTGTTGCA CTGTACATAG ATCTGCACGG TTACAGTGAG 
CTCGCCTGAG CAAGTGAGCA GCAAAAGCTC CTTGCCTGGC TCTGATTCAA 
TGTGTCTTGT AGTCGTTCAG TTCAGCTACA AATGTTCCAC ATACAACCGC 
ATGAAATGCC CAAACTCACC TTGTCTACTG CTCACCGAGC AGACAAGCGA 
TGCAGCCTGT GTTACTCTGT TTATAGAATG GAAATGGCAT ACACCTTGCA 
CGTTTTTATG

Gene models with high sequence identity

AT1G15980.1 [+] show detail - NDH-dependent cyclic electron flow 1
E-value: 9e-143; Score: 504.00

InterPro Scan Digest

Program	Description	E-value
superfamily	UDP-Glycosyltransferase/glycogen phosphorylas	1.1e-29
Gene3D	no description	1.7e-08
Gene3D	no description	0.00012
HMMPfam	Glycosyl transferase, family 9	0.00012

See the detailed result >

AT1G15980.1

Model type: Protein coding
Short Description: NDH-dependent cyclic electron flow 1
Curator Summary: encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.
Computational Description: NDH-dependent cyclic electron flow 1 (NDF1); INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 119 Blast hits to 119 proteins in 57 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR