K27016

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27016

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27016

Determination of introduced cDNA(s)

  • J033024G19 - Rice Full-length cDNAs - Original: J033024G19

    full reading [+] show sequence

    Nucleotide sequence: J033024G19 - full reading 
    GTTTCTCTCT CTCCTTGTCT CTCTGTGCTG TTGTTGTTGC GGGTGAATCT 
    GCTTGGATTT CGTCGGAGTT TTCTGTCGCG GAGGAGGAGG GGGTGGTGGT 
    TGATCGGAGG GGAGGGGGGA GGGAGATGGC GAGGGAGAGG AGGGAGATAC 
    GGAGGATAGA GAGCGCGGCG GCGCGGCAGG TGACGTTCTC GAAGCGGCGG 
    CGGGGGCTGT TCAAGAAGGC GGAGGAGCTG GCGGTGCTGT GCGACGCCGA 
    CGTCGCGCTC GTCGTCTTCT CCTCCACCGG CAAGCTCTCC CAGTTCGCCA 
    GCTCCAATAT GAACGAGATC ATTGACAAGT ATACTACACA TTCAAAGAAC 
    CTGGGGAAAA CAGATAAGCA GCCTTCTATT GATCTGAATT TAGAGCACAG 
    CAAGTGTAGC AGTTTGAATG AACAACTGGC AGAAGCAAGT CTTCAACTTA 
    GACAGATGAG AGGTGAGGAG CTTGAGGGAT TGAGTGTGGA AGAGCTGCAG 
    CAGATGGAAA AGAACCTCGA GGCAGGACTG CAGCGGGTGC TATGTACAAA 
    GGACCAGCAA TTCATGCAAG AAATCAGTGA GCTCCAACGA AAGGGCATTC 
    AGCTGGCAGA AGAGAATATG CGCCTCAGAG ACCAAATGCC TCAGGTGCCT 
    ACTGCTGGCT TGGCGGTTCC TGATACTGAA AATGTTCTTA CTGAAGATGG 
    ACAATCATCT GAATCTGTGA TGACTGCATT AAATTCGGGA AGCTCGCAGG 
    ATAATGATGA TGGTTCTGAT ATATCCCTGA AACTAGGGTT GCCTTGAAAT 
    AAAAGGACCA GCTAGAGAGC TGAGAAATGG GATGACGACC ACCATGAATT 
    ATTTGTCTGT GTGCATGAGT GGATGAAGTT GGAAGTTAAA TGCATCTTAA 
    GAAGATCAAG AAGATGTCAT GCTATGAGAT TACCAACAAG GCTGCAATAA 
    TCCTATCCTA TGTTAAAAAG GAGATCGATT GACTTGTCAT CCTATGCCTG 
    CTGATGCAAT GGTCCGGTTG CTTGGATCTT TTTTTCTCAA CTTGTACTAG 
    TGTACCATAC TACCTTCGTC GCACTTAATT TAAATGCGAC ATGTACGTAT 
    GTATCGTTCG CTTAATTCGT GCAAGTTATG TACGTACCTG TATGGGAACT 
    GTATGGAAAC TTGTGACCTC GGCTGAGACT TATTATTGGC ACAATTATTA 
    AGCTAGTCAT TCTCATCG

    Gene models with high sequence identity

    1. AT2G22540.1 [+] show detail - K-box region and MADS-box transcription factor family protein
      E-value: 8e-36; Score: 148.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Transcription factor, MADS-box 0
    HMMSmart Transcription factor, MADS-box 9.9e-35
    FPrintScan Transcription factor, MADS-box 1.3e-23
    FPrintScan Transcription factor, MADS-box 1.3e-23
    FPrintScan Transcription factor, MADS-box 1.3e-23
    HMMPanther MADS BOX PROTEIN 3.4e-58
    HMMPanther MADS BOX PROTEIN 3.4e-58
    Coil coiled-coil 0
    Coil coiled-coil 0
    ProfileScan Transcription factor, MADS-box 28.104
    ProfileScan Transcription factor, K-box 13.4
    HMMPfam Transcription factor, MADS-box 2.9e-23
    HMMPfam Transcription factor, K-box 2.2e-14
    superfamily Transcription factor, MADS-box 2.3e-28

    See the detailed result >

    AT2G22540.1

    Model type
    Protein coding
    Short Description
    K-box region and MADS-box transcription factor family protein
    Curator Summary
    Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter.
    Computational Description
    SHORT VEGETATIVE PHASE (SVP); CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 24 (TAIR:AT4G24540.1); Has 7469 Blast hits to 7448 proteins in 905 species: Archae - 3; Bacteria - 14; Metazoa - 824; Fungi - 324; Plants - 6168; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR