K27020

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27020

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27020

Determination of introduced cDNA(s)

  • J023009G10 - Rice Full-length cDNAs - Original: J023009G10

    full reading [+] show sequence

    Nucleotide sequence: J023009G10 - full reading 
    AGGCCGTGGT GGGCCCACCG TCTAGCGAAA ACCACCCCCG CCGCCGCGCG 
    TGCCACGTTT ACTCCCGTGG GCCCCGCAAC GAGGCACAAA CCCTAGGCCG 
    CTTATATAAA CCCGACCCGC CCCGCTCCGG TGATCGGATC CCCACAGCTT 
    TGCGTTTGCA CTCCTCTCGA TCTCCATTCG TTTTTGAGTT CCTCGTTTGC 
    TCCGCCTCTC TTTCACTCAT GGGCAAGATT AAGATCGGAA TCAATGGGTT 
    CGGCCGCATC GGCAGGCTGG TGGCCAGGGT GGCGCTGCAG AGCGAGGATG 
    TCGAGCTCGT TGCCGTCAAC GATCCCTTCA TCACCACCGA GTACATGACA 
    TACATGTTCA AGTATGACAC CGTCCACGGC CAGTGGAAGC ATCATGAGGT 
    CAAGGTCAAG GACTCCAAGA CCCTCATCTT TGGCACGAAA GAGGTTGCGG 
    TGTTCGGCTG CAGGAACCCT GAGGAGATCC CATGGGCTGC GGCTGGTGCT 
    GAATACGTTG TTGAGTCTAC TGGTGTTTTC ACCGACAAGG ACAAGGCAGC 
    AGCTCACTTG AAGGGTGGTG CCAAGAAGGT CGTCATTTCT GCTCCCAGCA 
    AAGACGCCCC CATGTTCGTT GTTGGTGTCA ACGAGAAGGA GTACAAGTCT 
    GACGTTAACA TTGTCTCCAA CGCTAGTTGC ACCACCAACT GCCTGGCTCC 
    TCTCGCCAAG GTCATCAATG ACAGATTTGG CATCGTTGAG GGTTTGATGA 
    CCACTGTCCA TGCCATCACT GCTACCCAGA AGACTGTTGA TGGGCCCTCG 
    ATGAAGGACT GGAGAGGTGG AAGGGCTGCT AGCTTCAACA TCATTCCTAG 
    CAGCACTGGA GCTGCCAAGG CTGTCGGCAA GGTGCTTCCT GCCCTCAATG 
    GAAAGCTGAC TGGAATGGCT TTCCGTGTTC CCACAGTCGA TGTTTCCGTT 
    GTTGATCTGA CTGTTAGGCT TGAGAAGCCC GCCAGCTATG ACCAGATCAA 
    GGCTGCAATC AAGGAGGAGG CTGAGGGCAA GCTCAAGGGC ATCCTTGGAT 
    ACGTTGAGGA GGACCTTGTT TCCACTGACT TCCAGGGTGA CAGCAGGTCC 
    AGCATCTTTG ATGCCAAGGC TGGCATTGCT TTGAGCGACA CGTTCGTGAA 
    GCTTGTGTCC TGGTACGACA ACGAATGGGG ATACAGCACC CGTGTGATCG 
    ACCTGATCCG TCACATGCAC AGCACCAACT AGACGAGCCC TCCTCATGGA 
    GGCCTGCAGA TACAGGGGAG TTGTGTTTTG CCCCAGAGAA GAGTAGATGA 
    AGCCTCTTCC GAGAATAAAT TTTAAATTCT GTATGGTTTT ATGTCCGTCG 
    AAACCTAAAA CTATACTTGG TTGTATCATG GTGGTTGGTT GGGCCTGGTC 
    ATGGCTCATA TTTTGTGTCT AATTTTCTTG CGCTTAATCT AAATCGAAGT 
    GTTGCTTCGC

    Gene models with high sequence identity

    1. AT3G04120.1 [+] show detail - glyceraldehyde-3-phosphate dehydrogenase C subunit 1
      E-value: 1e-160; Score: 563.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain 3.2e-73
    HMMPfam Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 1.4e-56
    HMMPanther Glyceraldehyde 3-phosphate dehydrogenase subfamily 4.3e-266
    superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 1.5e-82
    superfamily NAD(P)-binding domain 7.1e-68
    PatternScan Glyceraldehyde 3-phosphate dehydrogenase, active site 0
    Gene3D no description 6.6e-80
    HMMTigr Glyceraldehyde-3-phosphate dehydrogenase, type I 1.9e-197
    HMMSmart Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 3.5e-86
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 1.9e-48
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 1.9e-48
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 1.9e-48
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 1.9e-48
    FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 1.9e-48

    See the detailed result >

    AT3G04120.1

    Model type
    Protein coding
    Short Description
    glyceraldehyde-3-phosphate dehydrogenase C subunit 1
    Curator Summary
    encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.
    Computational Description
    glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (GAPC1); FUNCTIONS IN: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: in 11 processes; LOCATED IN: in 8 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C2 (TAIR:AT1G13440.1); Has 25372 Blast hits to 25360 proteins in 6350 species: Archae - 71; Bacteria - 10995; Metazoa - 2358; Fungi - 2851; Plants - 3864; Viruses - 0; Other Eukaryotes - 5233 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR