K27025

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27025

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27025

Determination of introduced cDNA(s)

  • J023110H14 - Rice Full-length cDNAs - Original: J023110H14

    full reading [+] show sequence

    Nucleotide sequence: J023110H14 - full reading
    GAGAAGAGGT GGTGGTGGTG GTGGTGGTGG TGTGTGGCCT CCTTCCCCTC 
    CCTCCTCTCG CGAGGTTGCC ATGCCTCCCC CAAGATCCTA GAACGCATCC
    CCACAACCTC ACCTCGCTCG CAAGAATCTT CTTCCCACCA TCGCCCTCCC
    TCGGGATCGA TCCAACCCGA TCATCAATCG GGGCGGGGAA GGAGGAGGAG
    GGGATGGAGG CGGACGCCGG GAAGCTGTTC ATCGGCGGCA TCTCGTGGGA
    CACCAACGAG GACCGCCTCC GCGAGTACTT CGACAAGTAC GGCGAGGTGG
    TGGAGGCCGT CATCATGCGC GACCGCGCCA CCGGCCGCGC CCGGGGATTC
    GGCTTCATCG TCTTCGCTGA CCCTGCCGTC GCCGAGCGGG TCATTATGGA
    GAAGCACATG ATCGATGGCC GCATGGTGGA GGCGAAGAAA GCTGTTCCCA
    GGGACGATCA GCACGCTCTT AGCAAGAGCG GCGGGAGCGC TCATGGATCG
    CCGGGGCCCA GCCGCACCAA GAAGATATTC GTTGGGGGGC TAGCGTCCAC
    CGTGACGGAG GCGGACTTCA GGAAGTACTT TGAGCAGTTC GGGACGATCA
    CCGATGTCGT GGTGATGTAT GATCACAACA CGCAGCGTCC CAGAGGTTTT
    GGGTTCATTA CGTACGATTC GGAGGATGCT GTGGACAAGG CATTGTTCAA
    GACCTTCCAT GAACTGAACG GTAAGATGGT TGAGGTCAAG CGCGCGGTTC
    CTAAGGAACT ATCACCTGGG CCTAGCATGC GTTCTCCTGT CGGTGGATTC
    AACTATGCCG TGAACAGAGC CAATAACTTC CTCAATGGAT ACACCCAGGG
    TTATAATCCG AGCCCAGTCG GTGGCTATGG AATGAGGATG GATGCAAGGT
    TTGGGCTTCT ATCGGGTGGC CGTAGTAGTT ATCCTTCTTT TGGTGGTGGT
    TATGGAGTCG GTATGAATTT TGATCCAGGG ATGAACCCTG CTATTGGGGG
    AAGCTC

    Gene models with high sequence identity

    1. AT3G07810.2 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 1e-105; Score: 380.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RNA recognition motif, RNP-1 3.8e-17
    HMMPfam RNA recognition motif, RNP-1 1.1e-18
    HMMSmart RNA recognition motif, RNP-1 1.7e-23
    HMMSmart RNA recognition motif, RNP-1 5.7e-25
    superfamily RNA-binding domain, RBD 7.3e-25
    superfamily RNA-binding domain, RBD 1.7e-24
    ProfileScan RNA recognition motif, RNP-1 17.95
    ProfileScan RNA recognition motif, RNP-1 17.899
    HMMPanther RNA-BINDING PROTEIN-RELATED 7.5e-126
    HMMPanther RNA-BINDING PROTEIN 7.5e-126
    Gene3D Nucleotide-binding, alpha-beta plait 2e-24
    Gene3D Nucleotide-binding, alpha-beta plait 1.9e-22

    See the detailed result >

    AT3G07810.2

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G47620.2); Has 54120 Blast hits to 30425 proteins in 1467 species: Archae - 38; Bacteria - 13586; Metazoa - 19029; Fungi - 4969; Plants - 7799; Viruses - 151; Other Eukaryotes - 8548 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR