K27042

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27042

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27042

Determination of introduced cDNA(s)

  • J013072H13 - Rice Full-length cDNAs - Original: J013072H13

    full reading [+] show sequence

    Nucleotide sequence: J013072H13 - full reading 
    GAGTTTCTCC CTGTCCACTT CTGTCCGATT CCTCCTCACC TCTTATCGAT 
    TGGACGACCA TGGCGGCGCC GCGCGAGCCG GAGGTGATCC GCGACAAGGC 
    GGCGATGCGC GCATGGTCGC GCCGCCGCCG CGCCGAGGGC AAGACCGTCG 
    CGGTCGTACC CACCATGGGC TACCTCCACC AAGGCCACCT CTCCCTCATC 
    TCCGCCGCCG CCGCCGCCGC CTCCGCTGAT CCCGTCGCCA TCGTCGTCAC 
    CATCTACGTC AACCCCAGCC AGTTCGCGCC CTCAGAGGAC CTCGCCACCT 
    ACCCTTCCGA CTTCGCCGGT GACCTCCGCA AGCTCGCCTC CACCGGCGTC 
    GTGGATGCCG TCTTCAACCC CCCTGACCTC TACGTCCGTG GCGCCGGTCG 
    CCGCGGCGCC GCCTCCGGAG GCGCGATCTC CTGCCTGGAG GAGGCGGCCG 
    GGGATGGGCA CGAGACGTGG GTTCGGGTGG AGCGATTGGA GAAGGGGATG 
    TGCGGGGCCA GCCGTCCCGT GTTCTTCCGA GGCGTGGCCA CCATAGTCTC 
    CAAGCTGTTT AACATCATCG AGCCGGATGT TGCTGTGTTC GGGAAGAAGG 
    ATTATCAGCA GTGGCGCGTC ATCTGCCGTA TGGTTCGTGA TCTTGATTTT 
    GCCATAGAGA TAATAGGATC AGAAATTGTG CGAGAAGCTG ATGGTCTTGC 
    CATGAGCTCC CGGAATGTGC ACCTATCACG CGAGGAGAGG GAAAAGGCAT 
    TATCCATCAG TAGATCACTG GTTGATGCTA GAACTGGCGC CTTGAAGGGA 
    AACACTGATT GCAAACAAAT CAAAAACAAA ATAGTACAGA CACTAACTGA 
    AACTGGCGGT CAGGTTGACT ATGTTGAGAT CGTGGAGCAA GAAAGTTTGG 
    TCCCTGTAGA ACAGATCGAC GGCCCTGTGG TCATTTGCGT TGCGGCGTGG 
    TTTGGAAAGG TCAGGCTGAT CGATAATATC GAAATCGATA CACGATCCTG 
    AGGTTTTGGG GGGATTCACT TGCTGTCTGC TGTGACCTTG GCATTGCGTT 
    TGAAATACCT TTTGTTTCGC GTGATGATTC GCGTCATGTT GTACGCTGTA 
    ACAATCACAG AGAGAAAATA TGCAGGAGTA CACTGACTGA AGGCAAATTT 
    ATAAGTACAA ACTGTAGAGG CCTGATGCTG TAACAGGGGA AATCATGCTT 
    GTTGATTACA GATTCCGCTG

    Gene models with high sequence identity

    1. AT5G48840.1 [+] show detail - homolog of bacterial PANC
      E-value: 7e-99; Score: 357.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Nucleotidylyl transferase 7.8e-100
    HAMAP Pantoate-beta-alanine ligase 34.246
    HMMTigr Pantoate-beta-alanine ligase 2.7e-94
    HMMPanther Pantoate-beta-alanine ligase 4.8e-137
    HMMPanther CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGAS 4.8e-137
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 5.6e-53
    Gene3D no description 1.1e-29
    HMMPfam Pantoate-beta-alanine ligase 1.4e-85

    See the detailed result >

    AT5G48840.1

    Model type
    Protein coding
    Short Description
    homolog of bacterial PANC
    Curator Summary
    Encodes a pantothenate synthetase that appears to be located in the cytosol. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis. Analysis of the catalytic properties of this enzyme indicate that it might be able to synthesize adequate amounts of pantothenate even in the presence of low levels of pantoate.
    Computational Description
    homolog of bacterial PANC (PANC); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Pantoate-beta-alanine ligase (InterPro:IPR003721); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR