K27049

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27049

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27049

Determination of introduced cDNA(s)

  • J033088P15 - Rice Full-length cDNAs - Original: J033088P15

    full reading [+] show sequence

    Nucleotide sequence: J033088P15 - full reading 
    GACGAGAAGA TTTCCATTAA CTCCGCCCTC GTGTGTTATC TATCCATCCA 
    TCCAGCCATC CGTCTCATCA CCCCCACCTC TTCGCTCCGT CGCCTCCTCT 
    CTCTCTCTCT CCTCGCCCCG CCGCTTTTTA GGGTTTTTGT TCGCGCCGCC 
    CCGGTGAGAG GTAGACGGGT CTCCCCGGCG AGATGGGCCA CGTCGACGCA 
    TCGGCCGCCG CCGCCGCCGC GCGCGACGCG AAGAAGAAGA GGGGGAACCG 
    GTCGTCGGCG AAGCTGAAGC AGTGCAAGCT CGACGCGCGC CGCGAGCAGT 
    GGCTTTCGCA AGTCAAGGAT GGAAAGGAGG CTAAGGCATC GACTTCGCCG 
    ACAGGTACAG AGCCAAATGC TGGGTCCATG ACCGTTCCTT CGCCACACCC 
    TCCGCTCCCT CGCCGTCGCT TAGATGTGAG GTCGAAGGGA GGGGATCCAG 
    AGGAGGACAG GGAGGAGAGG GGTGCTGCCA GGCAGGAGTT AGGCAGCAGC 
    TATCTGGACT CTCCTGTGCA CAGCCCTAGC TCGGACAATT CTGGGAGCGT 
    TGGCGGCATG CACAGGAAGC ATTACAACAA TGGTGGTGGC CTCAATCTCA 
    GCAGCAGCAG CAGTGTATGG TCCAGTTCGA GAAGTGTGAG CGAGGCCGAG 
    GATGATGATA CTGGTGGCCC TGAAGAGGAG AATGGGGTCT TGGATGACTG 
    GGAAGCTGTT GCTGATGCAG ATGCGCTTAC AGTTGATGAT TGTCATTCCC 
    ACCAGAGTTC AGGTCATGTG GCGCCACCAG CTGCTCCAAA TGTTTGTACA 
    GCTCCTGCCA ATCAAACTGG AAGGCAAGAT CCCATTCAGA GAACAAAAGC 
    TTGGGCGCCT GATGATATAT TCCGTCCACA GAGCTTACCC AGCATCTCCA 
    GGCAGGTCAG CTTCCCAGCA AGCATCGGGA ATGGCTGGAT GGGTGCTGCA 
    CAGCAGGCCA ACCTCTCTAC GCCTTTGACA TGTCCAATAT GCTGCGAGGA 
    TCTTGACCTG ACAGACTCAA GCTTCTGTCC TTGTCCTTGT AAATTTTGCC 
    TGTGTCTCTT CTGCCACAAC AAGATCCTCG AAGCTGATGG ACGCTGCCCT 
    GGGTGCAGGA AGGAATATGT TGCCGCGCGG CTATCCCGGT CTTGTAGCAT 
    GGGTCCAAGA TACTAGGTTG TGCCAGGGTT TATAATAGCT CTCTGTCGCA 
    ATTTGGTCCT TTGCTGTTGC TGTCAGATAT GCGTTTTGTC TTGTGTTGTC 
    CCTTTTTGGT ATAAAGAAAT GTGAATATTG GATAGGTGCT AAATCCATAT 
    AGAACGTCTC CAGAAACTCG GTGTCTGTTT TTAGACTGTT TGCATTGTAT 
    GTGATGCGTA TGTTGCTGGA GAGGACTCCT TATCGTTTTG TGATATCATA 
    TATGATAGCT ATATAAGATG ACCTTTGCAG CTACTTATCT ACCCATTTAT 
    GAGCAATGAA GTACATTGAT CTTTGCGT

    Gene models with high sequence identity

    1. AT3G48070.2 [+] show detail - RING/U-box superfamily protein
      E-value: 9e-22; Score: 102.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 8.713
    superfamily RING/U-box 0.0000000012
    HMMPanther CCR4-NOT TRANSCRIPTION COMPLEX RELATED 0.000000000000025
    Gene3D no description 0.0000000000004

    See the detailed result >

    AT3G48070.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G62910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR