K27114

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27114

Determination of introduced cDNA(s)

J013001H22 - Rice Full-length cDNAs - Original: J013001H22

full reading [+] show sequence

GGTCGCCGTT CTTGATTGGC TTGGCTGGCT TTGGCTTCCC TGTTCGATAT 
TGATTTGGTT TGTACTAGTA GAATACTGCT GGTATTAGCT AGGCGTTGAT 
AGTGGCCGGG GCTTAGCGTC AGGTCCACTG ACCACTGGGG CACTAATCAA 
AGTTGCTGAT TTCTTTCGCT TTCTTTTTTC GTTGCAATGC GATCCTCATG 
TCGGCGCGGG TATCGCGGGG GAGATCAAAG TTCGTAGCTT CGTTAGCCGC 
TTAGCCTACT AGTGCTCTCA TTAGTCTATA AGAGAGAATA GGTCTTTTGC 
TTTGCTTTCA GGACATGGTC ACCTTTCTCA GGCAGCAAGC GTAAGCAAGG 
CAGAGGAGAG GGAAAGAACC TCTCTGCAGT GCTGCTGCTG CTAGCTTGCA 
GAAAAAAAAA ACTCTCATCT TTTGCAGGAA GAGACATCAC TGTTTCTGCA 
TTCGTGTGCA TTTGGATTAA GCTTTGCTTA TCCCTTTTTA GTGGAGATTG 
TTGAGTATAT CAGGTAAACA CATGTGCAGT CTTGCTGTGC TGTATGTATG 
TGTGTGCATG ATTTTGTCGT TTGTTTTATG CATGCTGCGT TATCTGCTCT 
TATTCAAACT CTTGTTATGT GCTGGCTGGC TGATTCAATT AATCAGGTTA 
GGTACATGAT TGTTTCCCCT GTAAGTCATG TTGGTTTTCA GCAACTTGAT 
GCGATTGGAT AAACAAGTTT GAAAAACCGA CCATGTTTTG AGTATGCTGT 
TCCCTTGTTT CTGTTTTGAT TGCAACCTAA GAGACTCTTG AGTCTTGACT 
ATTCTAATGT TTGAAGATGT TGTTGTTCAA GCAAGAGACG TGCACTACTA 
TGCTCCTATG TAGTTACCCT CATACTAGCC TGAAAAGCTT ACACTCATAG 
ATATGCTTCT CTCACAGGTC TATATATTGG CAGCTCTGGT TGGAGATAGA 
CACTCACACT GAGCCAAGAT GGGGAGTTTG CACAAGTTCA GTGTTATTCT 
CCTCATGTTA TGTTTTGCTA CGTTGGGGAG CGCTCAGTAT GTCAAGTATA 
AGGATCCGAA GCAGCCCGTC TCTGTTCGTG TCAAGGATCT GCTCGGCCGG 
ATGACTCTCG CTGAGAAGAT TGGCCAGATG ACCCAAATCG AGAGGGAGAA 
TGCCACGGCG GAGCAGATTG CCAAGTACTT CATAGGTAGT GTACTGAGTG 
GTGGAGGCAG TGTGCCTGCT CCTCAGGCAT CAGCTCAGGC TTGGGCTTCA 
ATGGTGAATG AAATGCAAAA GGGTGCCCTT TCGACCCGAC TAGGTATTCC 
GATGATCTAC GGTATTGATG CCGTGCATGG GCACAATAAC GTCTACAAGG 
CTACAATCTT CCCCCATAAT GTCGGGCTCG GCGCTACCAG GGACCCCGAC 
CTAGTAAAGA GGATAGGAGA AGCAACTGCT CTTGAAGTTA GAGCTACTGG 
AATTCCCTAC GTCTTTGCTC CTTGCGTTGC GGTTTGCAGA GACCCAAGAT 
GGGGACGCTG CTACGAAAGC TATAGCGAAG ACCCAAAGGT TGTCCAGTCA 
TTGACCACAC TCATCTCTGG CTTGCAAGGC GATGTTCCAT CAAATGATGT 
AGGAAGACCA TATGTTGGTG GAAGTAAGAA AGTTGCTGCA TGCGCAAAGC 
ACTATGTTGG TGATGGTGGA ACGGTCAAGG GAATCAACGA GAACAATACA 
ATCATCGATA CTCACGGGCT GTTGACCATT CACATGCCTC CTTATTATAA 
TTCTATCATT AGAGGAGTCT CCACTGTCAT GGTTTCATAC TCTAGCTGGA 
ATGGAGTAAA AATGCACGCG AACCATCACC TAATCACTGA TTTTCTCAAG 
AACAAGCTCC GCTTCAGGGG TTTTGTGATT TCTGACTGGC AAGGCATTGA 
CCGGATCACT TCTCCTCCGC ATAAGAACTA TTCTTACTCA ATCGAGGCTG 
GAATTGGTGC CGGCATTGAC ATGATCATGG TTCCTTATAC CTACACAGAA 
TTCATTGATG ACCTGACAGA GCAAGTTAAC AACAAAATTA TCCCCATGAG 
CAGAATTGAC GATGCTGTCT ACAGGATTCT CCGAGTCAAG TTCACCATGG 
GTCTATTTGA GAGCCCTTTT GCTGACTCTA GCCTCGCCGA TGAACTTGGA 
AAGCAAGAGC ACCGTGAGCT CGCGCGCGAA GCGGTCAGGA AGTCCTTGGT 
GCTGCTGAAG AACGGAAAAT CCTCCTACTC TCCGGTGCTT CCCCTCCCGA 
AGAAAGCCGG TAAAATTCTC GTCGCGGGAA GCCATGCTGA TGATTTGGGC 
AGACAGTGTG GAGGATGGAC CATCACCTGG CAAGGACAGC CCGGCAACAA 
CATCACTGCT GGCACGACGA TCCTGTCGGC GATCAAGGCC ACCGTTGATC 
CCAGCACGAC GGTGGTGTAC TCGGAGAACC CGGACAGCAG CGTGGTCACC 
GGCGACAAGT ACGACTACGC GATCGTGGTG GTCGGCGAGC CGCCGTACGC 
GGAGGGGTTC GGCGACAACC TGAACCTGAC GATCCCGGAG CCCGGGCCGA 
CGGTGATCCA GACGGTGTGC AAGAGCATCA AGTGCGTCGT GGTGCTCATC 
TCCGGGCGGC CGCTGGTGGT GGAGCCGTAC ATCGGCGGCA TCGACGCGTT 
CGTGGCGGCG TGGCTGCCGG GGACGGAGGG GCAGGGCGTG GCCGACGTGC 
TGTTCGGCGA CTACGGGTTC ACCGGGAAGC TGTCGCGGAC GTGGTTCAAG 
TCCGTGGACC AGCTGCCGAT GAACGTCGGC GACGCGCACT ACGACCCGCT 
CTTCCCCTTC GGCTACGGCC TCACCACGCA GGCGCACAGC AGCTGATGCG 
GCGGCGATGT CGGTGGAGAG TGACGTTGGT TGGGACGTGA CGCCGTCGTG 
ACGAGAGAGA TGGCGATCAT GTAGTACTAC ATACACATGT TGTTGGGGTG 
GATTTGTTTG TGGTGGGGGA ATGCAATAAC GATGAGAGTG AGTGATGTGC 
TCAATTCTTG AGGCTGTGGC TGTTGTTAGT GTCATAGTGT TGGGTTGTGG 
AATAATAAAA AATCAGATGC GCTTTTGCCT TCTTTCTCTC GGC

Gene models with high sequence identity

AT5G20950.2 [+] show detail - Glycosyl hydrolase family protein
E-value: 0; Score: 939.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Glycoside hydrolase, family 3, N-terminal	2.9e-120
Gene3D	no description	1.8e-69
HMMPfam	Glycoside hydrolase, family 3, N-terminal	1.1e-69
HMMPfam	Glycoside hydrolase, family 3, C-terminal	8.4e-47
FPrintScan	Glycoside hydrolase, family 3, N-terminal	3.4e-26
FPrintScan	Glycoside hydrolase, family 3, N-terminal	3.4e-26
FPrintScan	Glycoside hydrolase, family 3, N-terminal	3.4e-26
FPrintScan	Glycoside hydrolase, family 3, N-terminal	3.4e-26
FPrintScan	Glycoside hydrolase, family 3, N-terminal	3.4e-26
superfamily	Glycoside hydrolase, catalytic core	5.7e-134
superfamily	Glycoside hydrolase, family 3, C-terminal	7.1e-78

See the detailed result >

AT5G20950.2

Model type: Protein coding
Short Description: Glycosyl hydrolase family protein
Computational Description: Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G20940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR