K27118

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27118

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27118

Determination of introduced cDNA(s)

  • J023009H08 - Rice Full-length cDNAs - Original: J023009H08

    full reading [+] show sequence

    Nucleotide sequence: J023009H08 - full reading 
    GAACCCGCCA TAGCTCCCGG CCTCCGAAGA TGGAGACCTC CTCCTTCCTC 
    CGCACCACCC TCCCCACCGC GAAGCCCCTC CCGGCGTTCC AGACCCTCGC 
    ACCCCGCCCC CGCCCCCGCC CGCTCCGCCG CTCCACCATC AGCGCGGCCA 
    TCACCCGAGG CCGCAAGGAG GACACGGTGG CCGCCGTCCG CGAGCAGCTG 
    GAGGGCTGCT ACCTCCTCGC CGGGATCCGC TACGAGGGCC TCACGGTGAA 
    GCAGCTACAG GGCATCCGCG ACACCCTCCC GGAGACCTGC CGGCTGCTGG 
    TGGCGAAGAA CACGCTGGTG GGGAAGGCCA TCGAGGGCAC GCCGTGGGAG 
    GCGCTCAAGC CGTGCATGAA GGGGATGAAC GCGTGGCTGT TCGTCCACAC 
    CGAGGAGGTC CCCGCCGCGC TCAAGCCCTA CCGCGCCTTC CAGAAGGAGG 
    AGCGCCTCGA GGAGACCAAC GACTTCGTCG GCGCGGTGTT CGAGGGCAAG 
    TTCTACGCCC CCGGGGACTT CAAGGCGCTC GAGACAATGC CCAGCCGCGC 
    CGAGGTGTAC GCCAAGCTGC TCGGCTCGCT GCAGGGGCCC GCGACCTCCG 
    TCGTCACCAC GCTGCAGGCG CCGGCCAGGG ACGTCGTCTC CGTGCTCTCG 
    GCGTACGTGC GCAAGCTCGA GCAGGAGGTC GGCGCCGCCT GATGGCTGTT 
    GAGAGATGGT TTTGTGGCTT CGTTTCTCTC ATCTCACTCA TTTCTTGTAG 
    AATTCCTGTA CTTTTACTGC CTCACGTTTG AATTGAATCA CAAAAGTTTT 
    ACCTCTTACA ACGCATGCCT ACTGGTCTGA TTTCATAAGA TTACCGAGTT 
    CTGATGTTAT TAGGATTACG TTGCGTACTT AGAGGGAATG CTTGTTCCAC 
    AACTAGTGTT TTGATAATTT AATTTTACCT GTAGAGACTA CAGAGATCAA 
    AGTTTAGTAG GTTGAGGGGC AATGGCAATG CACAATTAGA ATGGTCAATA 
    ACTACTAGTG CTTGTGTAGT TGTACCATCA ATCAGTGTAT CCAGGTTTAC 
    AACAAAGTTG TTCAGAGCAG TATGATGAGA TGTTTTAAAA CC

    Gene models with high sequence identity

    1. AT5G13510.1 [+] show detail - Ribosomal protein L10 family protein
      E-value: 2e-70; Score: 263.00

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP RL10_MF_00362 17.874
    HMMPfam Ribosomal protein L10 1.4e-21

    See the detailed result >

    AT5G13510.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L10 family protein
    Computational Description
    Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G12370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR