K27139

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27139

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27139

Determination of introduced cDNA(s)

  • J013157K21 - Rice Full-length cDNAs - Original: J013157K21

    full reading [+] show sequence

    Nucleotide sequence: J013157K21 - full reading
    GGCTTCTCAA TTTATCATTG TTTAACTTTT TTCTTCATCC GATTTTCGGT 
    TCGGACGAGA GCTCTATTGC CGTAGGAGCA GGAGAAGGGA GCAGGGAGAG
    CGCCGCCGCC GCCGCCGCCG CCGCACCGGC GCTGTGCCGA CGAGATGAGC
    CTCTCCCACC ACCTCCCCCC GCCGCCGGGA GACCCCTACT ACGTGTACGC
    GCCGCACCCC TACCCAGATC CGCAGCGGCA GGGGGTACTC ACGCTCTTCG
    TCGCCGGCCT CCCTGACGAC GTGAAGCCCC GGGAGATCCA CAACCTCTTC
    TCCAGCCGCC CCGGCTTCGA CCACTGCCTC CTCGAGTACA CCGGCCGCGG
    GAACCAGGTG GTGGCCTTCG TGTCATTCGT TAATCATCAG GCGGCTCTTT
    CGGCAATGTC TGCTTTAAAT GGGACTGTAT TTGATCCAGA TACTGGAGAC
    CGTTTGCACA TTGAGCTAGC TAAATCGAGT TCACGTAAAC GTCATGGAGA
    TGGTGGGGTT TATAGAGTTG TTGACAAACG ACTTAAGAGA AAAGAAAGAG
    CTGCTGACCA TGAGAATGCT GGTGATGGAG GTAATGATGA TGATGCATGG
    GGCGAGGATG ATAATGGTGG TAATGATGGA GATGGTGGAT CTGATGAGCC
    ATTGGACACA GAAAATGATG ATTCCGACGA AAAGAATGAA TTACCAGCAG
    AACGGAGTAG TGGTCAACCA GGGCTTAAGC AGCATAGGGG GCAATCTCTT
    TCAGATGATC AACCAGACAA ATTGTCAAGT GATATTCCAC CTTGTTCTAC
    TTTATTTGTT GCAAATTTGG GTCACTCATG CACAGAGGAA GAGCTAAAGG
    AAGTTTTATC TAAGCAACCT GGATTTCATT TGCTTAAAAT GCGCCGTCGT
    GGTGGAATGC CAGTAGCTTT TGCTGATTTT ACGGATATCG AGTCCTCTAC
    GGCTGCTATG GATGCTCTAC AGGGCACTGT GCTAGCTTCT TCTGACGCTG
    ACGGCTTGCA GATTGAGTAC GCAAGGTCAA AAATGAGGAA AAGCTAGCTC
    ACTAGCTACT TGTTCTACAT CAGCAGTGAG CGCTGACCAC CGGGGATCGA
    ACATGAAGGT ATATCATTTG CCATTTGGCA TCCCATGCCA GCACATGTAA
    TCGCCAGGCT GTAGCTGTGC TCTTTAATTG AATTCTAAGA ATATAGATCT
    GGGCAATCAA ACACTTTGTC ACAGAGTAGT TGGATCGTTT AATTTGGTTT
    CGCTCTCGTT CAGAAACTTC TCTGTCAGAG TCGGATCGTT AATTGTACTT
    CTTGTTTCTG AAACTTTCCG GAGACAACCA GGCGGCTAAC CGGCTCTATC
    AACAATCAAT TTGATGTATG TGCTCTTCTT TGTGCATATT GAACAATTAA
    TTTGATGTGC TCTTCTTGCC GCCATCTTTT G

    Gene models with high sequence identity

    1. AT3G13700.2 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 6e-65; Score: 245.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart RNA recognition motif, RNP-1 0.000024
    HMMSmart RNA recognition motif, RNP-1 0.000017
    superfamily RNA-binding domain, RBD 0.000000000000062
    superfamily RNA-binding domain, RBD 0.00000000000074
    ProfileScan RNA recognition motif, RNP-1 11.588
    ProfileScan RNA recognition motif, RNP-1 11.281
    Gene3D Nucleotide-binding, alpha-beta plait 0.0000000027
    Gene3D Nucleotide-binding, alpha-beta plait 2.2e-16
    HMMPanther RNA-BINDING PROTEIN 0.00000000000049
    HMMPfam RNA recognition motif, RNP-1 0.000000032
    HMMPfam RNA recognition motif, RNP-1 0.0000000016

    See the detailed result >

    AT3G13700.2

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G42240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR