K27149

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27149

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27149

Determination of introduced cDNA(s)

  • J013023D18 - Rice Full-length cDNAs - Original: J013023D18

    full reading [+] show sequence

    Nucleotide sequence: J013023D18 - full reading 
    GGGTGGGAGA CGAGGCGAGA CGCGCCTCGG TTTTATCCGC GTCCCTAGCT 
    TAGAGAGAGA GAGAGAGAGA AAGAGAGAGA GAAGGGCGTT TGACCTGTGA 
    CCCCGGCGGC GGCGGCGGCG ACGACGAGCG CGCCATGGCA GGTTCACCAC 
    CAAAGCCGTG GGAACGTGCT GGGGCTGAGG GAACTTCTGG CCCAGCACCT 
    TTTAAGCCCC CATCTGGTGG CACCACTAGC GATGTAGTTG AAGCTTCTGG 
    TACAGCTAAA CCCGGAGAAA CCGTCACCGC GACAGAGAGG AACCTCTCTG 
    CCAATGTAAA TAACCCTGTC TCGAGGCCTA TGCCACAACG TCCGTGGCAG 
    CAGACATCTG GCTATGGAAA TACTTATGGA GGTTATGGAT CCAATATGTA 
    CAGTTCGTAC GGTGGATTTG GCAATACCTA TGGTAGTGGT GGACTCTACG 
    GAAATAGCAT GTATTCTAGT TATGGTGGAG GTTATGGTGG TAGCCTTTAC 
    GGAGGTTCTG GGATGTATGG TGGAGGCATG TATAACAGTG GGTTGGGAGG 
    CTCTTATGGT GGTTACGGCA TGGGTGGCAT GGGTGGCATG GGTGGTATGG 
    GCGGTATGGG CATGGGCCCT TACGGTAACC AGGATCCGAA TTCATTTGGC 
    CCTCCTGCAC CACCACCAAG TGTCTGGGTG TCCTTCCTAC GAGTGATGCA 
    TGGTGTTGTC AATTTCTTTG GGCGAGTTGC ATTCCTTGTT GAGCAGAACA 
    CACAAGCATT CTATTTGTTT ATCACAGCTA TGTTGCAGCT CTTTGATCGG 
    TCTGGGATGC TTTATGGCGA ACTTGCCAGA TTTGTCTTGC GCATGTTAGG 
    AATCCGAACA AAGTCAAAGA AGGGCAAGGT TCAGGGCCCA GATACCCCAG 
    CTTTCGAGGG ACCTGCGCAG CAGTTCATTG AGGCACCAAA AGGGAACAAC 
    TCATGGGACA ACGTTTGGGG AAACTGAGAC GCCTTCTATA TAATGCAAAA 
    TTTAAGTTGA ACATACAGTT TACAAAGGAA TTATCATGGC ATGAGAGGTT 
    GCATGTCAGC AGTGAATCGA AACGAAGAGT ACTGTTGTTA AGGTGAATTA 
    CCTGCTGGAA TCGGGTTGAC AGATAGATAC TCTACTTTCT GAATTTCACG 
    CCGATCTGTG ATATATCCGA GTCCTAGTGG ACAGGTCCAA GATGTTGTGG 
    GCAGGTACAG TTTTTGCCCA GATGATGCAA TGGTATTTAA AGTAAGTATG 
    TTGTATCTTG TGGGTAATCA ATACTGTACC TGGAAGAGTT GGGCAAAATG 
    TATTAATGTA TCGTTTTCCT TGTTTTTCAT CATAACATAT GGAGTTGATT 
    TTGACTGAAG TTTGCCTCGG ACGTGCTGGT GGAGTGGTGG TACTTCATCA 
    GGACTGTCAT GCAAATGCTT TGGTTTGTTC TCTGT

    Gene models with high sequence identity

    1. AT3G07560.1 [+] show detail - peroxin 13
      E-value: 1e-31; Score: 134.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G07560.1

    Model type
    Protein coding
    Short Description
    peroxin 13
    Curator Summary
    Encodes peroxin 13 (PEX13) involved in protein transport into peroxisomes, for example, peroxisomal import of nitric oxide synthase.
    Computational Description
    peroxin 13 (PEX13); Has 58927 Blast hits to 16541 proteins in 1193 species: Archae - 47; Bacteria - 25769; Metazoa - 16443; Fungi - 3404; Plants - 6224; Viruses - 432; Other Eukaryotes - 6608 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR