K27231

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27231

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27231

Determination of introduced cDNA(s)

  • J013116K21 - Rice Full-length cDNAs - Original: J013116K21

    full reading [+] show sequence

    Nucleotide sequence: J013116K21 - full reading 
    GGTGTCCTCG CCTGAGGGTG TCCCCATCCC ATCCCGTCGG CTGGGCGTGG 
    AGGTGGAGTC CCGTGTCGCG AGTTCGGCCG CCGCTGCCCT GCGCCGATCT 
    CCATCCCCGT CGGTTGTCCT GCTGCTTCCG CCGCATCCTG GAGCTGCCGC 
    CATGTCCGAC ATGGAGTCCA TGACAGCCCT TATGGAGTCT ACAGGCTCCA 
    AGCTGCAGCT GCTTCAGCGT GCATTTGCCG AGCTTGAGAG CCAGAGTGCT 
    GTTTCATTGA ACTTAAAGTG GAAGCAACTT GAGGACCATT TCCATGGCCT 
    TGAGCAGTCG CTTAAGAAAA AGTTTGATGA GCTGAAAGAG CAGGAAAAGG 
    AGTTCAAGGA GACAGTCACG AAATCGGAGC AGATGCTTGA GCAACAAGAG 
    GCTGCTGTCG TGGCAAAGGA ACTGACTTCT CTTGAAAGAC TGCAGCAGAA 
    AAGGGATGCT GCGTTGGCTA TGATCTTCGG CAAGTCAAAG CTGAACTTGT 
    CTATGCCTGT AATCAACCCA ATCAGCAAAT CTGTGAGTAA CAATGCTGTG 
    TTAAATGGCA ACATCGCTAG CCTGTGGCCC AAACCTGCAA CTGCGCATGG 
    TGCATACCTG CAAGATGGAA ACACTGCTGT GAAGCCTCGT TCTCAACTTG 
    TTATCCTCTG TGAAGAAATG AATGTTAACG GGCTTCATAA GTTCATATCA 
    GACAATCGCA AAGACTTAAC ATCCATCCGT GAGGAAATTC CCGTTGCACT 
    TAGGGGAGCA ACTGATCCAT ATGGCTTGGT GTTAGCTTCT CTAGAAGACT 
    TCTATTTTGG AGACAATCTT ATATTGGATG GTAAAAAGGA TGGAAACCTT 
    CTGGGTGTAC GGAGGACGTG CCTCATGTTG ATGGAATCAC TTGCTCAGCT 
    GCAAACTGAT GCTACTACTG GTTTCATATC AAAAGGCCAA ATGCTTACTG 
    CTAGTATTAA GGAGAGAGCG AAAAAGATAG CGCTTGAGTG GAAATCCAAG 
    TTGGATAGCC TTGACTTTGA TGCTAGCAAT GGGAACTGCC TGGAAGCACA 
    TGCGTTTCTT CAACTCCTGG CTACCTTTGC TATATTTTCT GAATTTGCGG 
    AAGACGAGCT GTGTAAGCTT CTCCCATCAG TCAGTCGTCG TCGCCAGACA 
    CCTGAGCTTT GTAGAATACT TGGGTTGTCA CAGAACATGC CAGGTGTCAT 
    TGGAGTTTTG ATTGAAAATG GGAGAACTAT TGATGCAATT AATTTGGCTT 
    ATGCATTTGA GCTGACTGAT CAGTTTGAAC CAGTCGAATT ACTGAAAGCT 
    TATCTGAAGG AGGTCAAGAG TATGTCACAT GTCAAGACCG GAAAGATGTC 
    TCCGGGAGTA CAGAATGAAA TTAATGAACG CGAGTTGTCT GCCTTGAAAG 
    CTGTTATCAA ATGTATTGAG GAGCACAAAC TTGATGAGAA ATATCCTATC 
    GACCCACTTC AGAGAAGAGT CATCCAGCTA GAGAAAGCCA AGGCAGACAA 
    GAGGAGGGCT GTTGAAGCTG GAAAGCCACA GTCTAAGAGG CCTCGTGCCA 
    ACGGATCAGT ATATGCGCCA CATATTACTA GCTTTTCTGA CAAAAGCTTC 
    TACCAGGCCG CTGCGCCACA GAGGCATTCC TACCCTTACG AGAGGCAGTA 
    TGTATATGGT GCTGAGGCCC ATCATCACCC AACAATGATA AGCTCAGCTC 
    CCTATGGCAT GTCACCTGCC CACACAACAT ACTATGGTAA TGGCTATCAG 
    GTTCAGTACC AGGTACCATA TATCCACTGA TGGAGAGAGC GCCGTGTCCT 
    CTTTCTTAAC TATGTAGCTT TTAACCTGCT ACTATGTGTT GTAGTTGTAT 
    CAATCCACTA GCTAGACTGC CTAGCTGAAA TTAGTTCGAC CACTCCTGTG 
    TGTGCTGAGT GGCCAGTGTG AAAATCTGTT AATTTCCCTG ACGACTTATG 
    ACATAATTTA CTCCTAATGT TTAGTTAAAT AATTTGCTTT TGTTTAATAT 
    AAGGAGTTGA GATAGTCCC

    Gene models with high sequence identity

    1. AT5G48385.1 [+] show detail - FRIGIDA-like protein
      E-value: 3e-136; Score: 483.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther gb def: AT25102p (CG10541-PA) 0.00079
    HMMPanther Tektin 0.00079
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Frigida-like 1.8e-97

    See the detailed result >

    AT5G48385.1

    Model type
    Protein coding
    Short Description
    FRIGIDA-like protein
    Computational Description
    FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT4G14900.1); Has 1269 Blast hits to 1187 proteins in 101 species: Archae - 0; Bacteria - 22; Metazoa - 72; Fungi - 9; Plants - 1133; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR