K27241

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27241

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27241

Determination of introduced cDNA(s)

  • J013155H19 - Rice Full-length cDNAs - Original: J013155H19

    full reading [+] show sequence

    Nucleotide sequence: J013155H19 - full reading 
    TCAGACTCTA GCTTCTTCCT CTTTCTCTCT ATAAATCTTT TCCCGAGCCA 
    AGAAAACCAC CATTAAACCC ACCACCACCG CCACCTCCTC CACCTCCATG 
    GCGATGGCGA TGCACCGGTT CAGCCTCTGC TGCGTCGTCC TCCTCGTGCT 
    CGCGCCGCTC GCCGCCGTCG CGTGGCGGCC GTTGCCGCCA CGGAATGGGA 
    GCGGCGAGGT TGAGGGGATC GGGGCGTCCA AGAAGTTCGA GGGGTCGTCG 
    GATTTCGTCA AGCTGCAGTA CCACATGGGC CCCGTCCTCG CCGCCGACAT 
    CACGGTCCAC CCGATCTGGT ACGGCCGGTG GCCAGCCGAG CAGAAGCGCA 
    CCATCCGCGC GTTCCTCCGG TCGCTCTCGC CGCCGGGCTC GGGCTCCGGC 
    GATGGCGGCA TCCCGTCGCC GTCCGTGGCG GCGTGGTGGC GCACCGTGCG 
    GCTGTACACC GACCAGACCT CGGCGAACGT GTCCGGGGTG GTGAGGCTCG 
    GGCGGGAGAA GTGCGACGCG CGCGCGTCGC GGGGCGGGCG GCTGACGCGG 
    CTCGACATCC AGTCCGTGGT GCGGGACGCC GTGACGGCGC GGACGCGGCC 
    GCTCCCCGTG GACTCGAGCG GCGTGTACCT GGTGCTGACC TCGCCGGAGG 
    TGGTGGTGGA GAACTTCTGC GGGCAGGTGT GCGGCTTCCA CTACTTCACG 
    TTCCCGTCGG TGGTCGGGTA CACGCTGCCG TACGCGTGGG TGGGGAACTC 
    GGCGGCGCGG TGCCCGGAGG TGTGCGCGTA CCCGTTCGCC ATCCCGTCGT 
    ACGTGGGCGG GGGGCGGAGG GCGGAGGCGC CGCCGAACGG CGACGTGGGC 
    GTGGACGGGA TGGTGAGCGT CATCGCGCAC GAGCTGGCCG AGCTGGCGTC 
    GAACCCGCTC GCCAACGCGT GGTACGCCGG CGAGGACCCG TCGTTCCCGA 
    CGGAGATCGC CGACCTGTGC GAGGGGATCT ACGGCACCGG CGGCGGCGGC 
    GCGTACACCG GCCAGCTGCT CACCGACGGC CGCTCCGGCG CGTCGTACAA 
    CGTCAACGGC GTCGGCGGCC GCAAGTTCTT GGTGCAGTGG GTGTGGAACC 
    CCATCCTCAG CTACTGCTCC GGCCCCAACG CGCTCGACCA GTAGCCGCCG 
    CCGCCGCCAC GCACGAACGC AGTGTTCGTC CGCCCATGGA TTCGGATTCC 
    TTTTCTTGGG AATCCATGGT AGCTTTAAAT TCTTGTATAG ATCGAGCCGG 
    TGAAGTGAAC AAGGGTGGCG ATGTTTGGGG TTTTGGGTGA CTTTGGGTGA 
    ATGGATGGTA TGTTTGGGGG AGACTGTTTG GAACTTTGAG ATTATTTTGC 
    C

    Gene models with high sequence identity

    1. AT5G51550.1 [+] show detail - EXORDIUM like 3
      E-value: 1e-106; Score: 384.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G51550.1

    Model type
    Protein coding
    Short Description
    EXORDIUM like 3
    Computational Description
    EXORDIUM like 3 (EXL3); CONTAINS InterPro DOMAIN/s: Phosphate-induced protein 1 (InterPro:IPR006766); BEST Arabidopsis thaliana protein match is: EXORDIUM like 5 (TAIR:AT2G17230.1); Has 398 Blast hits to 397 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR