K27246

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27246

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27246

Determination of introduced cDNA(s)

  • J013129O14 - Rice Full-length cDNAs - Original: J013129O14

    full reading [+] show sequence

    Nucleotide sequence: J013129O14 - full reading
    GGAGTCGACG GCCGGCCACC GACTTGGGGG AAACCAAGCC ACCGCCGCCG 
    CAGCCGCCGT ACCCCACCCT CCCTCCCGGC GGCCGCGGGC CATAGCCGCG
    TTCTCCCCCG CGCGTCTGCC TGCGGCGTGG AGGCGTGGGG GGCGACGGCG
    ATGGGGTCCA TGACGATCGG CGCCAAGTAC AAGACCACGC TCAAGGACCC
    CGGCACCACC GGCGTCCTGC GCATGAACGA GGATAAGTTC ACCTTCACTC
    CCCATGATCC ACGGTCAGCG ATGAAGCTCA ATGTTGATTT CCGGAGCATC
    AAAGGCCACA AGTTCAACAA AGTAGATGGT AGCAAACCAG CTCCACCATT
    ACTGAATCTT TCAAAAGACT CTGACAAGGG TGGAGGCTAC ATGTTTGAGT
    TTGACAATGT TACTAACCGC GACCTATCTC GTGACTTTGT AGCTAAAGTT
    TTAGGTAAGC AACAAGGTAC GATACCGCCT AAACCAAATG TGCCCCCTGA
    AAATTCAGTT ACTTCAACTG GTGAAGAACA GCTTAGTGCT GCAGAAATGC
    AACGTCGGAT GAAATTGCTG CAAGAAGATA GTGAATTGCA GAAGTTACAT
    ATGAAGTTTG TTCTTGGCAA TATTCTGCAA GAATCTGAAT TTTGGGCAAC
    AAGAAAGAAT TTACTTGAGG ACGAAGCAAA TAAAGGATCA AAACAAAGGC
    CAGGTTTCAA AAGTGCCATG CTAGCTGATG TTAGGCCATC GGCTGATGGT
    CGGACAAATA AGGTTACTTT TAGTCTCACT ACCGAGATAA TTCATCAGAT
    ATTTGCAGAA AAGCCAGCTG TGCATCGAGC GTTTTTAGAT TTTGTTCCAA
    AAAAGATGTC AGAAAAAGAT TTTTGGACAA AATATTTTAG AGCTGAGTAT
    CTTCTTAGGA CAAAAAATAC TGTGGCAGCA ACTGCTGAGG CTGCTGAAGA
    TGAAGAGTTA GCCATTTTTC TGAAGAATGA CGATATACTA GCAAAGGAGG
    CAAGGTTGAA GATAAAACGA GTCGATCCAA CATTAGATAT GGAGGCAGAT
    GCTGGAGATG ACTACATCCA TCTTCCGGAC CATGGCATTA TTCGTGATGG
    CAGTAAAGAG ACGATTGATA ATGATGGTGA ATTGGCCAGG AGAACACTTT
    CGCAGGATCT GAATCGCCAT GCTGCTGTTG TGCTTGAAGG AAGATCTTCA
    GACGTGGAAT TAACTGATAC GAAGACTGTT GCTGAAGCAA TTGCAAGGTC
    CAAGAAAGAA CCACCTTCAA GTTCTATTTC TGATGATACC AATCATGAGA
    GGTTGGTAAA AGTGGCCCGC ATGACTGAGA TAGAGGATCT ACAAGCTCCA
    CGGAGCCTCC CATACGCACC ACTTTGTATA AAGGATCCTC GAGAATATTT
    TGATTCCCAA CAAGCAAATG CTCTGAGATC TTTAGGTGGC AACAATGATG
    GAAGACATGC TCGTAATTGC AGGCTGAGTA CAGATGATGC ATTTGATCAT
    TTGTTGGGCC AAATATCTTC TATAAAAGTT AATGGGTTGA ACTATCCGGT
    TATTCAGTCT GATGTGGCTC TTAAGGTTCT GAATGAATTG AATGAAGGAA
    TTTCACGTTC AAGAAGACTT AATCTTAAGA ATCCTCAAGA TAGTCTGCTT
    GGTCAAATCC CTCGACGCAC ACGAGATGAA CTTATGGATC ACTGGGCAGC
    TATCCAGGAA TTATTGCAGC ATTTTTGGTC ATCATATCCA ATAACAACTT
    CAGTTCTTTA TAATAAGGTT CAAAGAATTA AGGATGCAAT GACCCAGATA
    TATCAAAAGT TGCAGGATAT AAAGGAATCA GCACAACCTG ATGTGAGACA
    CGAAATATCT CAACTAGTAA AGCCCATGAC CCAGGCTTTG GATGCTGCCT
    TCAACCATGA CTTGGAGCAG CAGCAAAAAT CATCGAAATC CGGGAATAAG
    CCCAATGGGT TTTAACTTTA GCCGAGAAGA CTAGCTTCGG CGACGGATTA
    GGGATTGATT TACTGCTAGA GCAAGAGGGC TACTTGCAGT TCTGGAGGGG
    TTACCTCCTT GAGCCTTGAT TCTCATGTAT ATTTACCTGA GCTTTATAGT
    GGTGGGCATA ACGTGCTTAC TAAACGCCCC AATTTTTCAG TGCCTGATTC
    ATTCCAGGCA TACTCTGGGA TGGTTTGTGT TCATCACAGT TCCAGGTAGA
    ACCAAAATTT TGTGTACACT TTGGAAAGAA GGAAAAAAAA TGAGCACGCG
    TTGATGCTGC GTTCC

    Gene models with high sequence identity

    1. AT1G55750.1 [+] show detail - BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
      E-value: 3e-166; Score: 582.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam BSD 0.000000019
    HMMPfam BSD 0.00000000000011
    ProfileScan BSD 8.68
    ProfileScan BSD 14.469
    ProfileScan Vacuolar sorting protein 9 10.611
    HMMPanther UNCHARACTERIZED 1.3e-91
    HMMPanther Kelch related 1.3e-91
    HMMSmart BSD 0.13
    HMMSmart BSD 0.000000000017

    See the detailed result >

    AT1G55750.1

    Model type
    Protein coding
    Short Description
    BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
    Computational Description
    BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); CONTAINS InterPro DOMAIN/s: Kelch related (InterPro:IPR013089), BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (TAIR:AT3G61420.1); Has 363 Blast hits to 357 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 134; Plants - 65; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR