K27246

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27246

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27246

Determination of introduced cDNA(s)

  • J013129O14 - Rice Full-length cDNAs - Original: J013129O14

    full reading [+] show sequence

    Nucleotide sequence: J013129O14 - full reading 
    GGAGTCGACG GCCGGCCACC GACTTGGGGG AAACCAAGCC ACCGCCGCCG 
    CAGCCGCCGT ACCCCACCCT CCCTCCCGGC GGCCGCGGGC CATAGCCGCG 
    TTCTCCCCCG CGCGTCTGCC TGCGGCGTGG AGGCGTGGGG GGCGACGGCG 
    ATGGGGTCCA TGACGATCGG CGCCAAGTAC AAGACCACGC TCAAGGACCC 
    CGGCACCACC GGCGTCCTGC GCATGAACGA GGATAAGTTC ACCTTCACTC 
    CCCATGATCC ACGGTCAGCG ATGAAGCTCA ATGTTGATTT CCGGAGCATC 
    AAAGGCCACA AGTTCAACAA AGTAGATGGT AGCAAACCAG CTCCACCATT 
    ACTGAATCTT TCAAAAGACT CTGACAAGGG TGGAGGCTAC ATGTTTGAGT 
    TTGACAATGT TACTAACCGC GACCTATCTC GTGACTTTGT AGCTAAAGTT 
    TTAGGTAAGC AACAAGGTAC GATACCGCCT AAACCAAATG TGCCCCCTGA 
    AAATTCAGTT ACTTCAACTG GTGAAGAACA GCTTAGTGCT GCAGAAATGC 
    AACGTCGGAT GAAATTGCTG CAAGAAGATA GTGAATTGCA GAAGTTACAT 
    ATGAAGTTTG TTCTTGGCAA TATTCTGCAA GAATCTGAAT TTTGGGCAAC 
    AAGAAAGAAT TTACTTGAGG ACGAAGCAAA TAAAGGATCA AAACAAAGGC 
    CAGGTTTCAA AAGTGCCATG CTAGCTGATG TTAGGCCATC GGCTGATGGT 
    CGGACAAATA AGGTTACTTT TAGTCTCACT ACCGAGATAA TTCATCAGAT 
    ATTTGCAGAA AAGCCAGCTG TGCATCGAGC GTTTTTAGAT TTTGTTCCAA 
    AAAAGATGTC AGAAAAAGAT TTTTGGACAA AATATTTTAG AGCTGAGTAT 
    CTTCTTAGGA CAAAAAATAC TGTGGCAGCA ACTGCTGAGG CTGCTGAAGA 
    TGAAGAGTTA GCCATTTTTC TGAAGAATGA CGATATACTA GCAAAGGAGG 
    CAAGGTTGAA GATAAAACGA GTCGATCCAA CATTAGATAT GGAGGCAGAT 
    GCTGGAGATG ACTACATCCA TCTTCCGGAC CATGGCATTA TTCGTGATGG 
    CAGTAAAGAG ACGATTGATA ATGATGGTGA ATTGGCCAGG AGAACACTTT 
    CGCAGGATCT GAATCGCCAT GCTGCTGTTG TGCTTGAAGG AAGATCTTCA 
    GACGTGGAAT TAACTGATAC GAAGACTGTT GCTGAAGCAA TTGCAAGGTC 
    CAAGAAAGAA CCACCTTCAA GTTCTATTTC TGATGATACC AATCATGAGA 
    GGTTGGTAAA AGTGGCCCGC ATGACTGAGA TAGAGGATCT ACAAGCTCCA 
    CGGAGCCTCC CATACGCACC ACTTTGTATA AAGGATCCTC GAGAATATTT 
    TGATTCCCAA CAAGCAAATG CTCTGAGATC TTTAGGTGGC AACAATGATG 
    GAAGACATGC TCGTAATTGC AGGCTGAGTA CAGATGATGC ATTTGATCAT 
    TTGTTGGGCC AAATATCTTC TATAAAAGTT AATGGGTTGA ACTATCCGGT 
    TATTCAGTCT GATGTGGCTC TTAAGGTTCT GAATGAATTG AATGAAGGAA 
    TTTCACGTTC AAGAAGACTT AATCTTAAGA ATCCTCAAGA TAGTCTGCTT 
    GGTCAAATCC CTCGACGCAC ACGAGATGAA CTTATGGATC ACTGGGCAGC 
    TATCCAGGAA TTATTGCAGC ATTTTTGGTC ATCATATCCA ATAACAACTT 
    CAGTTCTTTA TAATAAGGTT CAAAGAATTA AGGATGCAAT GACCCAGATA 
    TATCAAAAGT TGCAGGATAT AAAGGAATCA GCACAACCTG ATGTGAGACA 
    CGAAATATCT CAACTAGTAA AGCCCATGAC CCAGGCTTTG GATGCTGCCT 
    TCAACCATGA CTTGGAGCAG CAGCAAAAAT CATCGAAATC CGGGAATAAG 
    CCCAATGGGT TTTAACTTTA GCCGAGAAGA CTAGCTTCGG CGACGGATTA 
    GGGATTGATT TACTGCTAGA GCAAGAGGGC TACTTGCAGT TCTGGAGGGG 
    TTACCTCCTT GAGCCTTGAT TCTCATGTAT ATTTACCTGA GCTTTATAGT 
    GGTGGGCATA ACGTGCTTAC TAAACGCCCC AATTTTTCAG TGCCTGATTC 
    ATTCCAGGCA TACTCTGGGA TGGTTTGTGT TCATCACAGT TCCAGGTAGA 
    ACCAAAATTT TGTGTACACT TTGGAAAGAA GGAAAAAAAA TGAGCACGCG 
    TTGATGCTGC GTTCC

    Gene models with high sequence identity

    1. AT1G55750.1 [+] show detail - BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
      E-value: 3e-166; Score: 582.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam BSD 1.9e-08
    HMMPfam BSD 1.1e-13
    ProfileScan BSD 8.68
    ProfileScan BSD 14.469
    ProfileScan Vacuolar sorting protein 9 10.611
    HMMPanther UNCHARACTERIZED 1.3e-91
    HMMPanther Kelch related 1.3e-91
    HMMSmart BSD 0.13
    HMMSmart BSD 1.7e-11

    See the detailed result >

    AT1G55750.1

    Model type
    Protein coding
    Short Description
    BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
    Computational Description
    BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); CONTAINS InterPro DOMAIN/s: Kelch related (InterPro:IPR013089), BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (TAIR:AT3G61420.1); Has 363 Blast hits to 357 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 134; Plants - 65; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR