K27311

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27311

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27311

Determination of introduced cDNA(s)

  • J013001E12 - Rice Full-length cDNAs - Original: J013001E12

    full reading [+] show sequence

    Nucleotide sequence: J013001E12 - full reading 
    GAATCTCTCC CCAGCGCCGC CGCCGCCGCC ATCCTCCCCG AGCCCTAGCT 
    CTCCCCTATC CCTCGCCGCA CGCACCACCA CCAACCATGG CCGGCGCGCA 
    GGAGTCTCTG GTGTTGGCCG GCGTGATGCA CGGCCACAAC GACGTGGTGA 
    CGGCCATCGC GACCCCCATC GACAACTCGC CGTTCATCGT CTCCTCCTCC 
    CGCGACAAGT CGCTGCTGGT GTGGGACCTC ACCAACCCCG TCCAGAACGT 
    CGGCGAGGGC GCCGGCGCCT CCGAGTACGG CGTGCCCTTC CGCCGCCTCA 
    CCGGCCACTC CCACCTCGTC CAGGACGTCG TCCTCAGCTC CGACGGCCAG 
    TTCGCGCTCT CTGGCTCCTG GGACGGCGAG CTCCGCCTCT GGGACCTCTC 
    CACCGGGGTC ACCACCCGCC GCTTCGTCGG CCACGACAAA GACGTCCTCT 
    CCGTCGCCTT CTCCGTCGAC AACCGCCAGA TCGTCTCCGC CTCCCGCGAC 
    CGCACCATCA AGCTGTGGAA CACCCTCGGC GAGTGCAAGT ACACCATCGG 
    CGGCGACCTC GGCGGCGGCG AGGGCCACAA CGGGTGGGTC TCCTGCGTCC 
    GCTTCTCCCC CAACACCTTC CAGCCAACCA TCGTCTCTGG CTCCTGGGAC 
    CGCACCGTCA AGGTGTGGAA CCTCACGAAC TGCAAGCTGC GCTGCAACCT 
    CGAGGGCCAT GGCGGCTACG TCAACGCTGT CGCGGTCAGC CCCGACGGTT 
    CTCTGTGCGC GTCCGGTGGC AAAGATGGCG TTACCCTGCT GTGGGACTTG 
    GCTGAGGGCA AGAGGCTGTA CTCGCTTGAC GCGGGTTCCA TCATTCACTC 
    GCTCTGCTTC TCGCCCAACC GCTACTGGCT CTGCGCGGCG ACCCAGGACT 
    CTATCAAGAT CTGGGGTCTT GAGTCAAAGC ACATTGTGCA GGACCTTAAG 
    CCCGAGATCC CTGTCTCCAA GAACCAGATG CTCTACTGCA CAAGCTTGAA 
    CTGGAGCGCA GATGGAAGCA CCCTCTATGC TGGTTACACA GATGGAACCA 
    TCAGGATCTA CAAGATCTCA GGTTTCAGCT ACGCCGGCTA GAGATGGGGA 
    GTGTTGTTTT AGTTATCGCG TTCTGGTAAA CGACTGTGGT ATCACCCTAG 
    TGTTCTTTTT GGCTGTTTGA AAGGCATTAA TCTGCCTGAG TACTTCTGCT 
    TAATTTACCC ATCTATGTAG TAGCTCCAGT ACTGAGCTCA TGGATACTGT 
    GGAATAGGGA TCTGTTTTGC ACCATGTTTT GTTTTGACTT CCTTTTCAAT 
    ATATTGTCTG ATGAACCATG CGATCC

    Gene models with high sequence identity

    1. AT3G18130.1 [+] show detail - receptor for activated C kinase 1C
      E-value: 6e-134; Score: 474.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam WD40 repeat, subgroup 0.000042
    HMMPfam WD40 repeat, subgroup 0.00000029
    HMMPfam WD40 repeat, subgroup 0.0000000004
    HMMPfam WD40 repeat, subgroup 0.0000000000051
    HMMPfam WD40 repeat, subgroup 0.000000024
    HMMPfam WD40 repeat, subgroup 0.12
    HMMPfam WD40 repeat, subgroup 0.0017
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    superfamily WD40 repeat-like-containing domain 3.3e-72
    HMMSmart WD40 repeat 0.00065
    HMMSmart WD40 repeat 0.0000072
    HMMSmart WD40 repeat 0.0000000033
    HMMSmart WD40 repeat 0.000000038
    HMMSmart WD40 repeat 0.0000000068
    HMMSmart WD40 repeat 0.25
    HMMSmart WD40 repeat 0.46
    FPrintScan G-protein beta WD-40 repeat, region 0.000000021
    FPrintScan G-protein beta WD-40 repeat, region 0.000000021
    FPrintScan G-protein beta WD-40 repeat, region 0.000000021
    Gene3D WD40/YVTN repeat-like-containing domain 2e-69
    HMMPanther RECEPTOR FOR ACTIVATED PROTEIN KINASE C (RACK 6.3e-206
    ProfileScan WD40 repeat 2 11.21
    ProfileScan WD40 repeat 2 15.154
    ProfileScan WD40 repeat 2 14.652
    ProfileScan WD40 repeat 2 13.182
    ProfileScan WD40 repeat 2 15.154
    ProfileScan WD40-repeat-containing domain 47.352

    See the detailed result >

    AT3G18130.1

    Model type
    Protein coding
    Short Description
    receptor for activated C kinase 1C
    Curator Summary
    Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1C has no phenotype on its own and probably acts redundantly with RACK1A and RACK1B.
    Computational Description
    receptor for activated C kinase 1C (RACK1C_AT); FUNCTIONS IN: nucleotide binding; INVOLVED IN: shoot development, root development; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: receptor for activated C kinase 1B (TAIR:AT1G48630.1); Has 88582 Blast hits to 37057 proteins in 965 species: Archae - 74; Bacteria - 10338; Metazoa - 34853; Fungi - 20136; Plants - 11319; Viruses - 6; Other Eukaryotes - 11856 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR