K27324

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) increased width (PATO:0000600) (Cauline leaf::Shape::wide) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few) abnormal (PATO:0000460) (Rosette leaf::Others)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	petal (PO:0009032)	abnormal (PATO:0000460) (Flower::Shape::petal)
	flower (PO:0009046)	abnormal (PATO:0000460) (Flower::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27324

Determination of introduced cDNA(s)

J013034M16 - Rice Full-length cDNAs - Original: J013034M16

full reading [+] show sequence

GATTGCTTGT CTTCAGGCTC TCCTCCTAGC TCCCAGAGAC CAGAGTAGTA 
GAGAGAGAGA GGAGGCAAAG CAGCAGCAGC AGCCGCAGCC AATACGATCC 
GCTCCTCCTC GCTCGCTCCT CGTCGACCTG GAGATTCCCC CCGCGCCGGC 
GCCGCCGATT TGATTCGCCC ACCCCTAGGC CCCAGCTAGC TAGATCTGGT 
GCGGATCCCT CGCCGTCGCC GCCATGTTCT GGCGCATGAC TGGTCTCTCC 
GCGGCCTCGC CGGTGGATAC AATTCTAGAC AAGGAGAACT TCACATTAGA 
AGAACTTCTT GACGAGGATG AAATAATTCA GGAGTGCAAA GCGCTGAATA 
CTCGTCTCAT AAATTTCTTG CGAGACAAGG CTCAAGTGGA GCAATTGCTT 
CGTTACATCG TGGAAGAAGT ACCAGAAGAT TCTGAAAAGA AACGTTCTTT 
TAAGTTCCCA TTCATTGCTT GTGAGATATT TACCTGTGAA ATTGACATCA 
TCTTGAGGAC CTTAGTAGAG GATGAAGAGT TAATGGATTT GCTTTTCTCA 
TTTGTAAGAC CTGGTCATCC ACATAGCACA TTGTTAGCTG GATACTTCAG 
TAAGGTGGTA ATATGTTTGA TGCTGAGAAA GACTTCCCCT CTAATGAACT 
ATGTCCAGGA GCACCCAGAC ATTGTTGTCC ATCTTGTTGA TCTCATCGGC 
ACCACCTCAA TAATGGAGGT TCTGATTCGA CTGATAGGTG CTGATGAGAC 
CATATACTCG AATTATGCTG ACACATTGCA GTGGTTAGAA AATACAGATG 
TACTGGAAAT GATTGTGGAT AAATTTAGCT CATCTGATTC CCCTGAAGTA 
CACGCCAATG CTGCAGAAAT TCTTTCTGCA GTGACTCGAT GCGCCCCTCC 
TGCTCTCGCT GCAAAAATAT GCAGCCCAAG TTTTGTTGGG AGATTATTTC 
GTCATGCTCT TCAAGAATCA CGCCCCAAAT CTGTCCTGGT TCATTCATTA 
TCAGTATGTA TATCTTTGTT GGATCCAAAA AGACTAGCGT CAGCCTCATA 
CCAAGCATTT AGAAGTAACT TGAGCCATGG GACATTGGTT ACTGCTAGTC 
CAGAGACAGT TGATGGTATG CTGGAGAGCC TAGGTGATTT GCTGAAGTTG 
TTGGATATTT CTTCTGCTGA AAATGTTTTA CCTACAACAT ATGGATGTTT 
GCAGCCCCCT CTTGGAAAAC ACCGCTTGAA GATTGTGGAA TTCATCTCTG 
TTTTGCTGAC GATTGGTAGT GAAACTGCGG AACAGGAGCT AATCAACCAA 
TCTGCAGTAA AACGTTCCAT TGATTTGTTC TTCCAGTACC CTTACAATAA 
CTTTCTGCAC CATCATGTCG AGAGTATTAT CATTTCTTGT CTGGAAGTTA 
ATAGATCCCA GCTGATTGAC CATGCCCTTA ATGAATGCAA TCTTGTTGGC 
AAAATTCTTG CTGCTGAAAG AAGTTCCTCC CTGTCAACAG AATCTAACAC 
ACCAACATTA CTATCTGAAG GGAAGGTGCC TCCAAAAATT GGGAATATTG 
GGCACATAAC TCGAATAGCT AATAAGCTTA TTCAACTGGG AAATAGCAAC 
AGCATAATCC AGTCTCATTT GCAGGAGAAC AGCGAGTGGG TTGAATGGCA 
GACAACTGCC CTGGTCAAAC GCAATGAGGT TGAGAACGTT TATCATTGGG 
CCTGTGGTCG TCCGACTTCT CTACATGATC GTGGTAGGGA TAGCGATGAT 
GATGACTTCC GAGACAGGGA CTATGATGTG GCGGCACTTG CTAATAACCT 
GAGCCAGGCA TTCCGGTATG GAATGTACAG CAATGATGAC ATTGAAGAGG 
CACAAGTAAT TGAACGAGAT GATGAGGATG TCTACTTTGA TGATGAATCA 
GCTGAAGTAG TAATATCTTC GTTGCGTTTG GGTGATGATC AGGACAGCAG 
CTCCCTCTTT ACGAATTCAA ACTGGTTTAC CTTTGATGGT GATAGAGGAA 
TAAATGACCG TTTAGCTGCC TCTGTCCCTT CTTCATCTCC CAATTCTGAA 
GAAACTTCTC TAAACACGGA GGAAACTGAT GAGGTGCAAA TTGGTGAGGA 
CACTAGCATC GAGCCACAAC TGGAAAGTGT CTCTCTTGAA AATGGCCCTG 
TTGAGGAGGC CGGGGACTTA GCAGATGTAA GTAAACAAAC AGATTCTAAC 
ACGGAAGACG AGAAACTATT GTGCACTGAA GAGGAAGATT TGTCCAAAGA 
AGCTGAAGAA TCTGAGCGAC ACGTGGATGT TCGAGATGGC CAGGTAGACA 
TACAGGCAGA AGATGCAGCT GAAGGATCAT GCGGGGATAT GGGTACAGGG 
ATAGCAGTGG ATGAACCTGT CAGCCCATCA TCTGAGCCCA ACAATGCTTC 
GGCTGGAGCT TCACCAGACA CAGGTGATAT CCATACTGCT GGCTCAACTG 
GATCCAACGA TTCAGGTGCA GAGTTGCATG CCAAGGAAGA TTCACAGGAT 
GGACAGAAAA CTGATGAGCC CACAACAACA GAGTGAAAGT ATGGTTGTGG 
TATGGATTGT ACCATCAGAC CAAAAGCAGC TACTGCTCGG CAGATCCTTC 
CAGAAGGTAT GGTAGTACTC ATGCCAAAGT CCCTAACCTC ACATCTTGGC 
AATCATGGAA AAATCAGAAG CAATGAGTGC TGTGCAACAA CATAAAGCTT 
TTGCTATCTG CAGTTGCAAT TTGCAAACGA GCACTTCCAT ATGCCGACTG 
TCTCACCTCA TCTCCAGATG CCTTGTCCTC AATTTGCATG GGACTCGTAC 
CACGTAATGG TGGGAAAGTT GGTTTTCCTT TTTTGTTCAG ACCTCACCTC 
AATTGGTGGT AGCTTTTGAT GATCCGTTTC AGCTGGTTTT GGCTACGTTG 
GTATTTGTCT TGTTTCTTAC GCTAGGGCAC TCGAACTGTA GCATTGGCAG 
TGAGTTTTTT CCCTTGTTTC TTTTAAATTG GATTAGCTAT CTCTGTATTG 
CTTAAGAGAA ACATACGGCT GGCTTTTTCT CTAGTTAAAT TAAGAGTATA 
TTTGTTCTTC TGTTCGGGAG TGGATTCTAT TCCCATCGAC GATGGGATAC 
CCTCTCGTGT ACCTTTACCT TTCAAATTTG ATGCAAATAG TTGTGAAAAA 
TTCTG

Gene models with high sequence identity

AT1G30470.1 [+] show detail - SIT4 phosphatase-associated family protein
E-value: 0; Score: 793.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SIT4 phosphatase-associated protein	5.4e-52
HMMPfam	SIT4 phosphatase-associated protein	5.8e-39
HMMPfam	SIT4 phosphatase-associated protein	2.5e-24

See the detailed result >

AT1G30470.1

Model type: Protein coding
Short Description: SIT4 phosphatase-associated family protein
Computational Description: SIT4 phosphatase-associated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT3G45190.1); Has 14427 Blast hits to 7672 proteins in 774 species: Archae - 138; Bacteria - 5542; Metazoa - 3700; Fungi - 2195; Plants - 440; Viruses - 108; Other Eukaryotes - 2304 (source: NCBI BLink).
Link: InterPro Scan - TAIR