K27335

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27335

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27335

Determination of introduced cDNA(s)

  • J013049H16 - Rice Full-length cDNAs - Original: J013049H16

    full reading [+] show sequence

    Nucleotide sequence: J013049H16 - full reading
    GTCTACCTGG AGCGCGCCGA CATGTTCAAG CACCTCGGGA GGCTGCTGTC 
    ATGGCGGAGC CAGGGCGGCA AGGACCTGCT CGTCCGCACC TGCGTCGTGG
    CGGCGCTCGC GTCGGCGCTC TTCACCAACG ACACCTGCTG CGTCGTGCTC
    ACCGAGTTCA TCCTCAAGAT CGCGCGGCAG AACAACCTCC CGCCCAAGCC
    GTTCCTCCTG GCGCTCGCGT CCAGCGCCAA CATCGGCTCC GCCGCGACGC
    CCATCGGCAA CCCGCAGAAC CTGGTCATCG CCGTCCAGAG CGGCATCTCC
    TTCGGCCAGT TCGTGTTCGG CATCCTCCCG GCCACCCTCG TCGGCGCCGT
    CGTCAACGCC GCCATCCTGC TCTGCCTCTA CTGGCGCCAC CTCTCCGACG
    AGAAGTGCGT CGAGGTCGTC GCCCCGGTCC CCACCGACGT CGTCGAAGAG
    GAGGACGTCA CCTCCCACCG CTTCTCGCCG GCGACCATGT CACACCCCCG
    TTCCTCCTCC CACCACCACC ACCACCAGCA GCCTGGCAGC TCGCTGTCGT
    CGCCTGACTG CGAGGTGTTC GAGCCAGTGA AGCCCGTCCC TGTCACCAGC
    AATGGCGACT CCAACAACAA GCCGGACGCC GCCGACGCCG CCGTCGTCGT
    CGGGATCCAC CAGAGGCGCG GCGGCGTCGG CGGCGGCGTG AGGATGAAGG
    AGGAACATGC GTTCCGGTGG GTGGAGGAGA AGGAGGAGGC CATGGAGCAA
    TGGAAGAGCA CGGTGTGGAA GACGGGTGTG TACGTCATCA CATTGAGCAT
    GCTGGTGGCG CTGCTGTTGG GTCTCAACAT GTCATGGAGC GCCATCACCG
    CCGCACTCGC CCTCATCGTC CTCGACTTCA AGGATGCCCG CCCCTGCCTC
    GAGAAGGTTT CCTATCCACT TCTACTCTTC TTCTGTGGGA TGTTCATCAC
    TGTGGATGGA TTCAACAAGA CGGGCATTCC TAGCGCATTC TGGGAATTCA
    TGGAGCCCTA TGCACGGATC GATACACCGA CCGGGATAGT AATCCTCGCC
    CTGGTTATTC TTCTCCTCTC AAATGTGGCG TCAAATGTTC CAACTGTTCT
    CCTGCTTGGT GCTCGGGTGG CAGCGTCAGC AGCGGCCATC TCCCCTGCAG
    CAGAGACCAA TGCCTGGCTC ATCCTGGCCT GGGTCAGCAC GGTGGCCGGC
    AACCTCTCCC TCCTTGGCTC CGCCGCGAAC TTGATCGTTT GCGAGCAAGC
    TCGCAGGTCG GAGCAGTACG GATACACCCT CTCCTTCTTC AGCCACCTCC
    AGTTCGGCTT CCCGGCGACG CTCATCGTCA CCGGGATTGG CCTACTGCTC
    ATCAGAAGCA ACTGAAAAAT GGTACAGAAC ATATATATGA AGAAGACATG
    GATATCAGGA CATGTACAAA AAGAATGTGA ATTTTCAGGT CAGGTCGATT
    GTATTTCTGC AAAGATTCAA TTGTGGGATA AAAGAAAAAT GTCTATCTTT
    GCCTCGGAAT TAAGCACGGA TATCATGGTG CTTGGAGGCT TTTTGAGCTG
    TACATTTGTT AGTTCATATT GGGGGGAGAA GATGTATATG TTGCAGTAGC
    AAGGATCATA AAAGGGAAAT GTATATTTTT GTTCAGCATT CTACTTGTAA
    TCCATATATA TTTTTTGAAG TCGAATAATT TGTATAGGCA GGAGAAGAGA
    AAATCAATGA AATGCATGCC CCTATCGATG CAGCTAATGT GTCTT

    Gene models with high sequence identity

    1. AT1G02260.1 [+] show detail - Divalent ion symporter
      E-value: 1e-117; Score: 420.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Divalent ion symporter 8e-79
    HMMPanther ARSENITE TRANSPORT PROTEIN 8e-196
    HMMPanther CATION TRANSPORTER RELATED 8e-196

    See the detailed result >

    AT1G02260.1

    Model type
    Protein coding
    Short Description
    Divalent ion symporter
    Computational Description
    Divalent ion symporter; FUNCTIONS IN: citrate transmembrane transporter activity, transporter activity; INVOLVED IN: citrate transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680); Has 9789 Blast hits to 6672 proteins in 1812 species: Archae - 302; Bacteria - 8135; Metazoa - 259; Fungi - 87; Plants - 203; Viruses - 2; Other Eukaryotes - 801 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR