K27335

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) upturned (PATO:0002031) (Rosette leaf::Shape::hyponastic) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27335

Determination of introduced cDNA(s)

J013049H16 - Rice Full-length cDNAs - Original: J013049H16

full reading [+] show sequence

GTCTACCTGG AGCGCGCCGA CATGTTCAAG CACCTCGGGA GGCTGCTGTC 
ATGGCGGAGC CAGGGCGGCA AGGACCTGCT CGTCCGCACC TGCGTCGTGG 
CGGCGCTCGC GTCGGCGCTC TTCACCAACG ACACCTGCTG CGTCGTGCTC 
ACCGAGTTCA TCCTCAAGAT CGCGCGGCAG AACAACCTCC CGCCCAAGCC 
GTTCCTCCTG GCGCTCGCGT CCAGCGCCAA CATCGGCTCC GCCGCGACGC 
CCATCGGCAA CCCGCAGAAC CTGGTCATCG CCGTCCAGAG CGGCATCTCC 
TTCGGCCAGT TCGTGTTCGG CATCCTCCCG GCCACCCTCG TCGGCGCCGT 
CGTCAACGCC GCCATCCTGC TCTGCCTCTA CTGGCGCCAC CTCTCCGACG 
AGAAGTGCGT CGAGGTCGTC GCCCCGGTCC CCACCGACGT CGTCGAAGAG 
GAGGACGTCA CCTCCCACCG CTTCTCGCCG GCGACCATGT CACACCCCCG 
TTCCTCCTCC CACCACCACC ACCACCAGCA GCCTGGCAGC TCGCTGTCGT 
CGCCTGACTG CGAGGTGTTC GAGCCAGTGA AGCCCGTCCC TGTCACCAGC 
AATGGCGACT CCAACAACAA GCCGGACGCC GCCGACGCCG CCGTCGTCGT 
CGGGATCCAC CAGAGGCGCG GCGGCGTCGG CGGCGGCGTG AGGATGAAGG 
AGGAACATGC GTTCCGGTGG GTGGAGGAGA AGGAGGAGGC CATGGAGCAA 
TGGAAGAGCA CGGTGTGGAA GACGGGTGTG TACGTCATCA CATTGAGCAT 
GCTGGTGGCG CTGCTGTTGG GTCTCAACAT GTCATGGAGC GCCATCACCG 
CCGCACTCGC CCTCATCGTC CTCGACTTCA AGGATGCCCG CCCCTGCCTC 
GAGAAGGTTT CCTATCCACT TCTACTCTTC TTCTGTGGGA TGTTCATCAC 
TGTGGATGGA TTCAACAAGA CGGGCATTCC TAGCGCATTC TGGGAATTCA 
TGGAGCCCTA TGCACGGATC GATACACCGA CCGGGATAGT AATCCTCGCC 
CTGGTTATTC TTCTCCTCTC AAATGTGGCG TCAAATGTTC CAACTGTTCT 
CCTGCTTGGT GCTCGGGTGG CAGCGTCAGC AGCGGCCATC TCCCCTGCAG 
CAGAGACCAA TGCCTGGCTC ATCCTGGCCT GGGTCAGCAC GGTGGCCGGC 
AACCTCTCCC TCCTTGGCTC CGCCGCGAAC TTGATCGTTT GCGAGCAAGC 
TCGCAGGTCG GAGCAGTACG GATACACCCT CTCCTTCTTC AGCCACCTCC 
AGTTCGGCTT CCCGGCGACG CTCATCGTCA CCGGGATTGG CCTACTGCTC 
ATCAGAAGCA ACTGAAAAAT GGTACAGAAC ATATATATGA AGAAGACATG 
GATATCAGGA CATGTACAAA AAGAATGTGA ATTTTCAGGT CAGGTCGATT 
GTATTTCTGC AAAGATTCAA TTGTGGGATA AAAGAAAAAT GTCTATCTTT 
GCCTCGGAAT TAAGCACGGA TATCATGGTG CTTGGAGGCT TTTTGAGCTG 
TACATTTGTT AGTTCATATT GGGGGGAGAA GATGTATATG TTGCAGTAGC 
AAGGATCATA AAAGGGAAAT GTATATTTTT GTTCAGCATT CTACTTGTAA 
TCCATATATA TTTTTTGAAG TCGAATAATT TGTATAGGCA GGAGAAGAGA 
AAATCAATGA AATGCATGCC CCTATCGATG CAGCTAATGT GTCTT

Gene models with high sequence identity

AT1G02260.1 [+] show detail - Divalent ion symporter
E-value: 1e-117; Score: 420.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Divalent ion symporter	8e-79
HMMPanther	ARSENITE TRANSPORT PROTEIN	8e-196
HMMPanther	CATION TRANSPORTER RELATED	8e-196

See the detailed result >

AT1G02260.1

Model type: Protein coding
Short Description: Divalent ion symporter
Computational Description: Divalent ion symporter; FUNCTIONS IN: citrate transmembrane transporter activity, transporter activity; INVOLVED IN: citrate transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Divalent ion symporter (InterPro:IPR004680); Has 9789 Blast hits to 6672 proteins in 1812 species: Archae - 302; Bacteria - 8135; Metazoa - 259; Fungi - 87; Plants - 203; Viruses - 2; Other Eukaryotes - 801 (source: NCBI BLink).
Link: InterPro Scan - TAIR