K27420

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27420

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27420

Determination of introduced cDNA(s)

  • J013106J21 - Rice Full-length cDNAs - Original: J013106J21

    full reading [+] show sequence

    Nucleotide sequence: J013106J21 - full reading 
    GAACCTTTGC CATTCCCCTG TCTTCTTCCA TCTCCAAATC CTTCTTCCCT 
    AATCCCCCTC GCCGGCGAAG CGCGGCGGCG GCGGCGGCGC CTTCTTCCCT 
    AATCCCCTCG CCAGCGGGGA GCCGCAGGGC GGCGGAGGCG TGCGTCGGCT 
    GCTGCTGCTG CGCGGGCGGG GGAGGTGGGG AGAGATGCAC AGATCCGCGG 
    GCGCCACGAT GGCGTGGAAC GTGTTCAGGT TCTGCACTGC GCTGAGGGGG 
    CTGGGCTCCA TCATGATCCT GCTCGTCCTC TCCATCGTCG GGGTCACCTA 
    CTACGCGGTC GTGGTGTACA ACTACGGCCC CGCGCTCTTC GCCGGCGGCG 
    CCAGCACCCT CCTCGCGCTC GTCGTCCTGC TCCTCTTCCA CTTCCTGCTT 
    GTTATGCTTT TATGGAGCTA CTTTTCTGTT GTATTCACCG ACCCTGGTTC 
    TGTTCCACCA AATTGGAATC TCGACTTTGA TGAGGAGAGG GGAGAAACTG 
    CCCCCCTTCC TGGCTTAGAT TTCAATAGCC AGGTAAACTC GCAACAATCT 
    ATCGCTCACA ATGACACAGG ACATCCAAGG GCTAGGTATT GTAGGAAGTG 
    CAACCAGATG AAGCCACCTC GATGCCATCA TTGCTCTGTT TGTGGAAGAT 
    GTGTTCTTAA GATGGATCAT CATTGTGTAT GGGTTGTTAA TTGTGTTGGG 
    GCACTAAACT ACAAATACTT TCTTCTCTTC CTGTTTTACA CCTTCCTTGA 
    GACAACACTG GTTACCCTTT CTCTATTGCC TCGCTTCATA GCCTTCTTTA 
    GTGATATTGA TATCCCAGGA AGTCCTGCAG CACTTGCAAC CACTTTCCTC 
    ACCTTTGTGT TGAACCTGGC CTTTTCCTTG AGTGTTCTGG GTTTTATGAT 
    TATGCATGTT TCACTTGTTT CTGCTAATAC AACAACAATT GAGGCATATG 
    AAAAGAAAAC TACGCCACGC TGGATGTATG ATATTGGCCG GAAGAGGAAT 
    TTCATTCAGG TTTTTGGAAA TGACAAGAGG TATTGGTTCA TCCCTGCGTA 
    CTCAGAAGAG GATTTGAGAA GAATGCCAGT TCTACAGGGC CTTGATTACC 
    CTGTCAGGAC AGATTTGGAT GGGCAAGAAT TGTGATGGGA CAATTTCGCC 
    TGTGCCCTCA CTTCCCATAT GCACCAAATA TGTTCCATGT AAATTTTACG 
    GTTTCCTTCC GATATCGTAG AGTTAAATAT TTTTAAAGGT ACACCTTAGT 
    ACTGACAGCA TTGCTGGTTG GGTACTACAT GGCCTCCGAA GAGAGTGTTC 
    CCAGAATTAC TTTTCAAACC CTGTGTAATT CACTTGTGCT GTCTGATTGG 
    GCAAAGAACG TAGAGGTCTT GCTATTGTGG CTAAAAGAGG CATGTGATGT 
    AAATTCTTTT TAGTGTGTTT CAGATGGGTT TCCAGATGTA TGATGTACAA 
    TGATTTGAGC TGTGCAATAG ACGTACAGTT ATTAGAGCAT GACATGTTGA 
    TAAGATAACC TGTGTTAATT AGAGAACTGG ATGTTTAAGT GTTATTTT

    Gene models with high sequence identity

    1. AT3G60800.1 [+] show detail - DHHC-type zinc finger family protein
      E-value: 4e-118; Score: 422.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 3.9e-53
    ProfileScan Zinc finger, DHHC-type 28.411
    HMMPfam Zinc finger, DHHC-type 1.4e-26

    See the detailed result >

    AT3G60800.1

    Model type
    Protein coding
    Short Description
    DHHC-type zinc finger family protein
    Computational Description
    DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT4G22750.1); Has 5091 Blast hits to 5089 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 2186; Fungi - 767; Plants - 823; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR