K27422

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27422

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27422

Determination of introduced cDNA(s)

  • J023082F07 - Rice Full-length cDNAs - Original: J023082F07

    full reading [+] show sequence

    Nucleotide sequence: J023082F07 - full reading 
    GATTCCCACC ACAAGCTAAT TAAGGTACCA GCAACTCCAT CACATCCTTA 
    ATTTGCAGCA GCAGGTAATT GTACACCGGC GAAGGAAATT AAAGGAAAGT 
    AGGAGATCGA TGGCCAAGCC AAGCGCCGCC GCCTGGTCCA CCGGCCTCTT 
    GGACTGCTTC GACGACTGCG GCCTATGCTG CATGACGTGC TGGTGCCCGT 
    GCATCACGTT CGGGCGGGTG GCGGAGATGG TGGACAGGGG GTCGACGTCG 
    TGCGGCACCA GCGGCGCGCT GTACGCGCTG CTGGCGACGG TCACCGGCTG 
    CCAGTTCGTC TACTCCTGCG TCTACCGGGG CAAGATGCGC GCCCAGTACG 
    GCCTCGGCGA CGACGCCGCC TGCGCCGACT GCTGCGTCCA CTTCTGGTGC 
    AACAAGTGCG CGCTGTGCCA GGAGTACCGC GAGCTCGTCG CCCGCGGCTA 
    CGACCCCAAG CTCGGATGGG ACCTCAACGT CCAGCGCGGC GCCGCCGCCG 
    CCGCAGCGCC CGCCGTGCAG CACATGGGCC GTTAAATGGA TTAGCTAGCT 
    ATAGCGTCAC CTCGTATCTA TCATATCATC GATCGATCGT ACTTTGGGCG 
    TGTGAAGTGG TGTCCAGTTA AAAAAAAGTT TTTTTTTTGG GAGCTAGTTA 
    TAGTATCCAG TTTTTTAAAA GAAATTTATA AGTGGTATAT TAATTATATG 
    CGTTTTTTTA CTTGATACTA TCTACTATGC CTCTATATAC TCCTGTAATT 
    AAGTTTGTGT AAGTATGGTG ACGCATGGTC AGGTTTTGTT TGTAATTCTC 
    TGCACTTAAT CAATTGTTTG TTGTATCT

    Gene models with high sequence identity

    1. AT1G14870.1 [+] show detail - PLANT CADMIUM RESISTANCE 2
      E-value: 4e-39; Score: 158.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function Cys-rich 1.5e-34
    HMMTigr Protein of unknown function Cys-rich 2.9e-30

    See the detailed result >

    AT1G14870.1

    Model type
    Protein coding
    Short Description
    PLANT CADMIUM RESISTANCE 2
    Computational Description
    PLANT CADMIUM RESISTANCE 2 (PCR2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G35525.1); Has 803 Blast hits to 802 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 115; Plants - 527; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J013031M24 - Rice Full-length cDNAs - Original: J013031M24

    full reading [+] show sequence

    Nucleotide sequence: J013031M24 - full reading 
    GCTCCACCGC CACCGCCACC GCGAGGAAGA CGCGGTCGCC GTAGCAGCCA 
    CGTCTCCTCC ACCACCTCGT CTCCCTCTCG AGAGAGACAC CGCGCGTCTC 
    GTCTCGTCTC ATGGCGCCGC CGCCTCGGGC TCGCTTGGTG CAGATCGGGA 
    CCCGCCGCCG CCGCTGCCGG GGCCGGATCC CGCCTTGCAC CAAGTGAATC 
    GGAGCCGGCG TAGCGCCCTC CTTCCGCCGA TCCGCCGCCG ATGCTGCGCT 
    GCTTGGTTGT TTTTATTGTC TCTCCTTCGT TTCTGGGTCG GTATCGGGAC 
    GGGGTTAGCG ATGAATCGGA TCGAATTGCT GATCCTCCTC GTGTTCGTGT 
    TCGTAGGTGT GGGGCGTACG CGTTTGTATT AGATTTAATT TTTTTTTCAG 
    ATCTAGATCT GGTGCCTAAT TCTCGATTAC TTATTCTATC TATGATTCGT 
    GTCGGCGTTA TCAAGTTGGA ATTTCCCCTA ATTTTTGGTG GCTATCCTGA 
    GTTTGGTACT CGTATCAGTA TCAGGAGTAT GGTTTCAGGG GAGGCCACCT 
    AGAATTAGCG GGAAAAAGAT CTGAATCTCA TTGTCTTTTT GGGTAGATGA 
    GGTTTATTTG CGATCTATGC TTTGATTGAA CTGTGGGTAT CATTTATTGA 
    TATGGATGTT GTTAATCTGA ATCTACCACT GCTAGTACGG GTCTATCATG 
    GTTGCTAATT AAGATGAAGG TTGAAATTAT GGTGAATTCA TTTTGGTATA 
    ATGATCTGTG ACCATGAGTT CATGCTGAAT CCTGTATATG CTTAATTTAG 
    CACATCTGCT GTAGTCTGCA TAGTGGTCTT CATGGCATAT GCTAATTCTG 
    GTAGTGCCAC CAATAAGGTG TGGCCTTGCC CTTGCTCTGT TCAGTTGTGG 
    AAATTAAGAA CTTTGATTCT AAATGCATGC TATTTGTTAG AGGCTGTGTG 
    TGGCTACAAG TTTCTACATG CCCTTTTGGC CTAACAGAGG CATATGCTTA 
    TCGCTAATAT AGACCTTAGC CATGGTCAAA CAAACAGGTT ACTAGTTGCA 
    AGTTTGCCTT TCTCGTATTT TAAGATCTAA TTCCGAGGAT AAAGCTAATA 
    GACCGGAGAT AATTAGTGAT GCGAAAAAAG ACTTAGTGTT TCAAACAACT 
    TTGGGACTTA TCTAGTTTAT CTACTGACCT AGGTAAGTGA ATTATTGTGC 
    TATATAGCTG AGTAATTTAA TTAATAGTGC AATAAAACTA CTTGTCTCTA 
    GTTTATCGAT GTTATGAAAA TGACTAATTC AATTTATGTT GTAATTGTAA 
    ATTGTTTTGA GGTAAACTTT CAAACTTACT TTCTTAAGTT TACAGGTTTA 
    ACTCTTTTCT TTAATGGCCT GTCGAAGTAT TTAATTCATG GATTGATTCA 
    ACGGCGGGAA GATAGATTTA CTACATCAAA AAGCAGCTGG CTTTCCTTTT 
    GAAAAAAAAG CATCGATCTG TTTTGCCGGG CCAAAATGCA TTAATCTTGT 
    TCTGGAGATA ATTTTAAATT CCTTCACAGT GTACAACTTT GAACCAATGG 
    GCTTCTTTGA TGCTCAACGG TTTTGCATCC ATGCTAGTAC TAGTATATTT 
    GCATATGTAT CTATTTGTAG GGATGTGCTT TTCCTCTGGA TTGATGCTGG 
    CTGCGCTGCC TGAAATAGTA AACACAGTAC AAATCATTGA TAAATTAAAC 
    AAGACCTAGT CTTAGTTCAA ATGTCAGGCC ATTGATTGGT CTAGTTTTGT 
    GGGTATCTTG ATAGATCCAG CTTTCACCAT AAACTAACAA TGGTTTCTAT 
    TCAGCTTT

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >