K27426

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27426

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27426

Determination of introduced cDNA(s)

  • J033034E16 - Rice Full-length cDNAs - Original: J033034E16

    full reading [+] show sequence

    Nucleotide sequence: J033034E16 - full reading 
    GAATCACTGT TATGGAGCAT ATATCCTCTC TTCAGCTTGC AGCTCAAGAG 
    TGTGAGAGTG TTGTCTAGGT GATCATCTTC TCCTTTTTCT GTTCAGTTCT 
    TGGTTCACAC TGTCAAATCT TTTCTTCTCC TTCTCCTTTT TCCTGAAAAA 
    TATCTTGTTC TACTTTCCCC TCCTGCAAAT CCTGGGAGCA ATACTAGAAA 
    AGTTTTTCTC TTGTGTGCTG TCTGTGCCCA TCTCTTCGTT TGGTGCCAGC 
    TTTGGCAAAG CCCTTTATTA TCACTCTCAT CTAATCTAGT ATCTGTCCCC 
    TGTGCTGTCC TCATCAGCAA ATTTACTCCC TACCTGAGCT TGGTATGCTA 
    GCCATTAATG CTCTCCCCTG GACTGATGTG TGATGTGAGT CCTTGCATTT 
    AGCTATCAAA GGAAATCTCC TTTCGTGGTC AAGCTTTAGG TGGAGTTTGA 
    TGAGTTCGGC TGGGCTTCAT TTATTCCCAA AGATTTGAGC TCTTGATGCT 
    GCTTTAATAG TTCAGAGATT CCAGCGTCCT TCACTTCTTG CAGCTCAGGA 
    AAGGATTCGA TCTTTGAGCT TCTAGTGTTT CTTGGAGCTT TGCTCTTCGT 
    GTTCATCGAT CCCAAAATCC CCCTTTTTTG CTGGTTTCTT TAGCTTGCCT 
    GATCAATCAT CCCAAGATCT TAGCAGAATG GGTTCTTCTT GGTGGTGGCA 
    TGGAAGGGCG GCGGCGGCGG TGGCGTGTTG GGTGTGGCTG GCGGCGGCGG 
    CGGCGGTGGG GGTGGAGGCG ATAGGGGCGA ACTGGGGGAC GCAGGCGAGC 
    CACCCGCTGG CGCCGGACAC GGTGGTGCAG ATGCTCAAGG ACAACGGGTT 
    CGACAAGGTG AAGCTGTTCG ACGCCGGGGA GGACACCATG AGCGCCCTGA 
    GGAAGAGCGG GCTGGAGGTG ATGGTCGGCA TCCCCAACGA CATGCTCGCC 
    GCCATGGCCA GCAGCATGGC GGCCGCCAAC AAGTGGGTCG ACCAGAACGT 
    CTCCAACTAC CTCAACGACG GCGTCAAGAT CAGGTATGTT GCTGTTGGTA 
    ACGAGCCTTT CCTGGAGACA TACAATGGAA GCTTTCTGCA AACTACTTTT 
    CCTGCCATCA GAAACATACA AAGTGCGCTT GTGAAGGCTG GCTTGGGTAG 
    TCAAGTTAGA GTGACATGCC CTCTCAATGC TGATGTTTAT CAATCATCGA 
    CTAGCAAGCC TTCTGATGGG GACTTCCGCA CAGATATTCA TGATCTGATG 
    CTCACCATCG TAAAATTCCT GAGCGATACT GGTGGAGCTT TCACTGTCAA 
    CATCTACCCT TTCATAAGCC TCTATTCTGA TTCAAACTTC CCTGTCGACT 
    ACGCCTTCTT TGATGGTGCC GCATCACCCA TTGTTGATGG CTCTGCGACA 
    TACACAAACA TGTTTGATGC AAACTATGAC ACACTTATAT GGGCTTTGAA 
    GAAGAATGGC TTTGGAAATC TCCCAGTCAT TGTTGGGGAG ATTGGATGGC 
    CAACTGACGG GGACATGAAT GCAAATATTC AGATGGCGCA GCACTTCAAC 
    CAAGGCTTCC TAACACATAT TGCCACAGGG CGAGGAACGC CGATGAGGCC 
    TGGACCAGTT GATGCTTACT TGTTCAGTCT AATCGATGAG GATGAGAAGA 
    GCATACAGCC AGGTAATTTT GAGCGTCACT GGGGGATATT CACCTATGAT 
    GGCTTGCCAA AGTATCAACT GAATCTTGGG CAATCACATG GCCTTCTCAA 
    AGCGAAGAAC GTGAAGTACC TTGAGAGGAA GTGGTGCGTG CTGAAGCCTT 
    CTATAGGCCT TACTGATCCA AGGCTTTCAG ATAGCATCAG CTATGCCTGC 
    TCCCTGGCAG ATTGCACCAG CCTTGGTTAC AAGACATCTT GTGGGGGACT 
    GGACACCAGA AGCAACATCT CGTACGCGTT CAACAGCTAC TACCAGAAGA 
    ACGATCAAGA CGATGTCGCC TGTGGGTTCT CGAACCTCGC AACGATCACT 
    GGCCAAGACC CCAGCACCGG AACATGCAGA TTCGGTATCA TGATCGAGGT 
    TGACTCGGCC TTCTCGTGGA AGCTGCAGCA TGTTAGAAGC AGCAACCTCT 
    TGATGCTTCT GCTAGTGCTT CTCCAGCTTT GCCTGTCATT CTCATAGATG 
    CTTGTTTCAC AAGAGATATG GCTGTAGTAA GAGCATCAGC CATCTGGCAG 
    GAGGATAAGG ATATTTGATG TCTGCTGTCA GTATGTTCAT TCATGTAGGA 
    ACCTTTTCTT TTTTTGCTCT TTTTTCCCTC TTTATTTTTC CCTGGTGGAT 
    GCCGCGAACC CGCTATCGCG ATCATGCTTG GATTCTTGTT AGTGTAGCCT 
    TTGATCTACC AGTGCCATTG TGATGAGGAT CATGCCTTGA ACCATTGATT 
    GACAATCAGA GATGTTGGGC GATGTTGCCG AACCTGCATG CAATCAGGCG 
    AGTTCAGACT TC

    Gene models with high sequence identity

    1. AT5G58090.1 [+] show detail - O-Glycosyl hydrolases family 17 protein
      E-value: 1e-176; Score: 617.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart X8 1.9e-38
    Gene3D Glycoside hydrolase, subgroup, catalytic core 7.3e-107
    HMMPfam Glycoside hydrolase, family 17 6.9e-76
    HMMPfam X8 9e-24
    PatternScan Glycoside hydrolase, family 17 0
    superfamily Glycoside hydrolase, catalytic core 5.8e-100

    See the detailed result >

    AT5G58090.1

    Model type
    Protein coding
    Short Description
    O-Glycosyl hydrolases family 17 protein
    Computational Description
    O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G31140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR