K27501

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27501

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27501

Determination of introduced cDNA(s)

  • J033025H14 - Rice Full-length cDNAs - Original: J033025H14

    full reading [+] show sequence

    Nucleotide sequence: J033025H14 - full reading 
    GATTCCGCCT GAACCCCACA CCCGGATTCC GCCGTCAGCC AAAACCCTCG 
    CCGCCGCCGC CGGCTGCATG CGTGGTACCT CGGCACCGGA GAACTCCCCT 
    GTCCTCCTGG CCGTCCGCGC GTAGCCTCCG CTCTCCGACG CAGCGCCCGC 
    CCGCCCGCCC GCCCGCCCGA GCACCGGCGG CCCTTCGTTT CTCCGGCACC 
    TCCGCCGCCG CGCGACGTCG GAGGGATCGC AACAGGAGGC CAGAACACAA 
    GAATTCTGCT GGATTAGGGT TGTTGCTCTC CTCCAAGTGG CATCCAACGG 
    AACAGTAAAT GAAATTAGAG CTGAACAAGA TATCTCTTGG GTGTATTCTT 
    ATTTATCTGT TGGGAACTTC AACCAAATAG GTTCTCAGAA TTGGCTTCAA 
    AGTTCAAACC CATGTGCTTT CTGCTCGTTT GACATACCCA CTATATACAT 
    TTCACACCAT TCCACTCATT TGCAATGGGG CCTCACCCAC CTAGTAGTTA 
    TTCAGATAAA AAAACTTGCC AAAATGTCCC ACCAGAAAAA CCCAGCTCCA 
    CGAGTTTCTG CCATCCACAA TTTCCGCAGC ACTTACTTTC ACATCCAGCA 
    TATGCAATGA ATTTCCCTTT CCCGCCGTTT CCTCACTATC CTCCATACTC 
    GCAAAATTTC CAATATGCTG TTCCACCACA ATATGCTCCA TACTCATTAC 
    CGCCACCTGA TGGAGCTATG CCATCACCAT ATGTACCAGC TACAGTTATG 
    CCATCCAAGG CACCCTCTGA TCAAGGCACC CCACATTCAG TAACTGGTCC 
    AGGACAACAA GATGATGACG ATGCTGAACC TGAGAGGACT GCTAGGCGAC 
    TAGCATGGAC AGAAGAGGAA GACATTAGAT TGATAAGCAC TTGGTTGATT 
    AACTACAAGA CTGACAAGTA CTGGGATAAG GTTGCAGCAG AATACAACAG 
    TGCAACCCCC GGAGCTCGGA GAAGGGAAGT GAAGCATTTG AAGAACCGCT 
    GGCAGAGGAT GATCAATAAG GTGGCACATT TCAATGATTG TTGGTGCCGG 
    GTCATGGCAA AATATCCTAG TGGCCAGTCA GAGGGCATGC AACAGATGGA 
    CAAAACTTGG CTGATGTATA ATAAGGAAGC ACATGTGATG TATCTCGAAG 
    AAGCGAAGCA TAAGTTCACC TTTGGCCATT GCTGGAACGC TGTTTGGGAC 
    CAACCCAAGT GGAAAGAATA CATCTCTTCT TTCTCCGCAA AAAGAGTGAT 
    GCGATCTGAG TCCGGTGGTT ACGTGTCATC TTCGGAAGAC TCTGAAGATA 
    TGCAAGAAGG AAAATGCTTA GTGGATCCTC TGGACATGCT TCCCAAGAAC 
    CATGAAGATA TGACAGAAGT CCAGCCGTCT GTCTCAAATC AAAAGAAGCA 
    ATTAGAACTA TTGACAGCTG ATGCGTCGTG GCCTATTGAA TTTCAGCTTG 
    GGAGGCACCA ATTGATGACT GGAACATCAA AATTGAACGA ACATCAGCAG 
    GGGGTGGCAG TGAGGGATGA AATGCTTGAA AAAGAATCGG GCCCACAAGA 
    TTTTGAGGTG CTAGACAATG AGAGAGTGGC AAGGGAAGAT GAACCTAAAA 
    AAGAAACACA GCCTCATCAA GGTTTCAAGG CGCGAAAGGT CAATCGGAAA 
    CGTAAAGGCA AGGCATCATC TTCTTCATGT GAGGTGCAGG AAGACATCAA 
    ACATGCATTA TATCTTCAGA CCATGCTTAA CAATGATCGT GAGAAAATGT 
    CAGAGGTACA GCTCCGCCTC TCGAAAGAGC AGCTTGAATT GGCCAGAATA 
    AAGCAGGATG AAGCGAATGT AAAGAAAGAA ACAGCACTTT ACATGAAATA 
    CACAGAGCTG TTGCTGGCAG ACACTTCAAG GTTTGATGAG TTTCAGAAGG 
    CAGAGTATGA GAAAGCATTG AAGCATATAG GAGGGATACT ATTTAGCAAG 
    GATGTCAATT AGTGCCCTCG CAACAATTTA TCTTAAGCAT GCATTTCTGT 
    GCAAATATCA TCCCAACAAC TAGTAATAGA TCGTTTTGTT CTACTTAACT 
    GAAGGATTGC CTCCACTAAC ACCTGTGTCT GTGTTAGGTT TAATCATCTC 
    TAGCAAGATT TAACAGAGAT TAGTACTGAT TGAATCGTGG AAGTGATGGA 
    TCAATATGTA TTTAGCTATT AGTGGCTTAT CTAATTTGCA ACTGACCTGT 
    GCAAAGAATG AACTAGTGGC TTGTCTTGGA GTGATGGTTG AAGGCAAATT 
    GCAAATACTT GAAAGTTAAC CC

    Gene models with high sequence identity

    1. AT5G41220.1 [+] show detail - glutathione S-transferase THETA 3
      E-value: 0.00000000003; Score: 67.80

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan MYB-like 7.155
    Coil coiled-coil 0

    See the detailed result >

    AT5G41220.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase THETA 3
    Curator Summary
    Encodes glutathione transferase belonging to the theta class of GSTs. Naming convention according to Wagner et al. (2002).
    Computational Description
    glutathione S-transferase THETA 3 (GSTT3); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: glutathione S-transferase THETA 2 (TAIR:AT5G41240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR