K27515

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27515

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27515

Determination of introduced cDNA(s)

  • J023014G11 - Rice Full-length cDNAs - Original: J023014G11

    full reading [+] show sequence

    Nucleotide sequence: J023014G11 - full reading 
    GCTTCTTCTT CTTCTTCTTC TTCTTTCTTT CTATTCCTTT CCTTCCTCCT 
    CACTTCTTCC TTCTTCTTCC TCCTCCACTC TCCTCTCCCC TCCATCCAAC 
    GCTGCTTCGT CTTTGGAGTT GGAGTTGGAG TTGGACACCA CCCACCGGCA 
    CCTAGCTAGG CTTCTCTACC ATCATCTGTG ATCTTTCTTG TCGAGAGAGA 
    GAGCAAGCAG TTGCATGCCT GATTGGTCAG CGAGTGAGCT GCTGGTGGCG 
    GTGGCGGCCG CGCTTAGTCA GCGGTGGTGA CTGTCCCGGC GATGTCGGGA 
    GCTGACCGGC TAAGCATCCG CGCCGCGGCG CTGGCGCTCG ACGATGCTGC 
    CGCCGGGAGG GACAAGCCGG ACACCAAGCG TGACGTCTTC GCGGATCTTG 
    GCTCGCCGGT GTCGCCGCTG CGGCTGCGGC CTGGCGGCGC CGCGGCCACG 
    CCGTCGTCGT CCTCCTCGTC CGCTGGCTCG GCCAAGTCGC CCGCGCTGTG 
    CAATGCTGGG GCGGGGGTGG GTAGGGGAGG AGGAGGAGGC CGGGGGAGCC 
    ACTCAGGCGA GCTGGTGGCG GAGGGGAACC CGCCGCGGCC GCCAGGGCAC 
    CGCCGCTCCG GATCTGGGCC TCTGATATTC TCCGGCGGGA GCAGCAGCGC 
    CGGGAGCGGA GGAGGAGGAG GAGGCTGCGG CGGCGGGAGC ACGGCGAGCT 
    CGCCGCTGAC CAATGCGCTG CCTACCGGTA ACATCTGCCC GTCCGGCCGC 
    GTCGCGAGCG CGGCGCCTGC GCCGCCCCGA CGCGCCCGTC CCGACGTGCT 
    TGGATCCGGC ACGGGGCACT ATGGCCACGG CAGCATCATG AGAGGCGGCG 
    GCGGCATGAC TCCCCCTAGA AGCAGCATTG ACGCCAGTCC GTACCACGGC 
    AGCTACTCGA GGTCGCCGGC GCCGCAGGGC AGCAGCGGGG GTCTCCAGGA 
    GGTGACCAGG GCCGGGAACG AGTGGTACAA GAGGGGCCAT TACGGCGAGG 
    CGCTGCGGCA CTACGACCAG GCGGTGGCGC TGTGCCCGGA CAGCGCCGCG 
    TGCCGCAGCA GCCGCGCCGC CGCGCTCATC GGCCTCGGCC GCCTCGCCGA 
    AGCGCTCCGC GAGTGCGAGG AGGCCATCCG CCGTGACCCG GCGAGCGGCC 
    GCGCGCACAG CCGCCTCGCC GCGCTCTGCC TCCGGTTTGG AATGGTTGAG 
    AGGGCAAGGG AGCGCTTCAT GTTAGCTGGG CAAGTAAATC AGTCAGACCC 
    AGCTGAGTTT CAGAGGCTCC AAGAGGTGGA AAGACATCTG GGGCGATGCA 
    TGGATGCGAG GAAAACTGGA GACTGGAAGA GTGCGCTAAG GGAAGCAGAT 
    GCTGCCATTG CCAATGGAGC GGATTCCTCT CAGTTGCTTC TTGCCTTACG 
    GTCTGAAGCA CTTCTCCGTC TCAACAAACT AGAGGAGGCC GATTCGACTA 
    TTACAAGCTT GTCAAAACTG GACATTGCAT CGCTATCTTC AATGTCAACT 
    AAACTATCGG GCATGGTTGC TGATTCATAT GTTCATGTTG TCGAAGCCCA 
    GGTCAACATG GCTTTTGGAA GGTTTGACAT AGCTGTTACC ATGGCTGAGA 
    AGGCTAGGGT TATTGATCCT GGAAATACAG AAGTTGGAAG GATTACAAAC 
    AACATAAGAT TAGTTGCACA AGCTCGAGGA CAGGGAAATG AGCTTTTTAA 
    GGCAGGCAAG TTTGCTGAGG CGTCCTTAGC TTATGGTGAA GGGCTCAAAT 
    ATGAGCCCTC AAATCCAGTA CTGTACTGCA ATCGAGCAGC TTGTTGGTCA 
    AAGTTAGGTC GGTGGATGAA AGCTGTTGAA GATTGCAATG AGGCCCTCAA 
    AGTCCATCCT GGTTACACGA AGGCTCTCTT AAGACGTGCA GCATCCTATG 
    CAAAGGTAAG CGATACATGT ATCATTGTAT TTCTGATTAT TTGCGCATTG 
    TGGTGTTGAT ATCTCCCTGT TAACACTCAA TTAGCTTGAG CGCTGGGCCG 
    ATTGTGTGCG GGACTATGAG GTGCTACGCA AGGAGCTTCC TAACGACACG 
    GAGGTTGCGG AAGCATTGTT CCATGCGCAA GTTGCACTGA AGACAGCACG 
    TGGGGAGGAG GTAGCAAATA TGAAGTTTGG AGGAGAGGTT GAGACAATTA 
    CCAGCATAGA GCAACTCCGA GATGCTATAC ATTCACCTGG AGTATCTGTT 
    GTTTACTTCA TGGCAACGAT GAATCAGCAG TGTCAACAGA TAACCCCATC 
    CGTGGACTCT CTTTGCTCCG AGTGCCCTTC AGTGAATTTT CTGAAGGTAA 
    ATGTTGATGA GAGTCCTATG GTAGCAAGAG CGGAGAATGT GCGCATAGTC 
    CCGAGCTTCA AGATATACAA GGACGGTGCA AGAATGAAGG AGATGATCTG 
    CCCCAGCTTA CACATCTTGC GCTATTCAGT CAAGCATTAT GCTGTCTCCA 
    GTTCTTGAGG AGGTCTTACT AGTGGCACTC ATATTTTTTG ATGCATATAA 
    TTCCCTGTCA CCTACCAACA TTTTACCAAC AAACTATTCT CTATAATCAG 
    CCTCCACAGC ATTTCTCCAG CTGCATAGTT ACTCTCCGCT GAGCATAATG 
    AGCTAAAGCT TGATTCACGA AGTAGTTTCC TATTGGCTAT CTTTCCTTTG 
    TTACCTGTTG CATCTATTTT CTGATCCTTC ATCCTTCCAA CCTTATTCTT 
    GGATCATTTA GGTTCCTTCA TTTGCTTATT CCCACCCATC CATCGTTCGG 
    CCAACCTGCA TTGTGCAATT CTTTCATCTC TTACATTCTG TTCTGCCACC 
    TCATAATGCA TTTGACACAT TTTTGCTGCA GCCCATAGGC CACTCCTCAA 
    GAAAAAGAAT GCTTCTGTTC TGACATTGTT TAGATGCAGG CATGCTTGTT 
    GTTAGAGAAA GAAATAAGAG GCTGCAGACA GAATTGGTTT TTTTCATTAC 
    ATGTACATAT ACCATATAGC AAAAACATGA AACCAATTGG AAGATTTGAT 
    TCTATGGAGG GATGGTGGTG CCACTTTGCA GTGGACAGAA GTACAGGGCT 
    AGTTGCCAAT TGTAGAGAGA AGATAGATGA AGAAAGACAA TGTAATTGGT 
    AGGGAGATAA TGAGGGAGGT GGTTGATGTC TCTTTGCATA TGCCTCTGCT 
    GGGTCTGTGG TGCTGATACA TATATACTAC TTGCTGACAT TTTTATGAAT 
    AAAAATAGCC CAACATTCTT TCTTATTTCT ACTC

    Gene models with high sequence identity

    1. AT1G53300.1 [+] show detail - tetratricopetide-repeat thioredoxin-like 1
      E-value: 2e-131; Score: 201.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Tetratricopeptide repeat 0.68
    HMMSmart Tetratricopeptide repeat 0.52
    HMMSmart Tetratricopeptide repeat 260
    HMMSmart Tetratricopeptide repeat 130
    HMMSmart Tetratricopeptide repeat 11
    HMMSmart Tetratricopeptide repeat 9.4e-06
    superfamily Protein prenylyltransferase 5.4e-32
    superfamily Thioredoxin-like fold 3.7e-29
    HMMPfam Tetratricopeptide TPR-1 2.1e-07
    HMMPfam Tetratricopeptide TPR2 2.9e-05
    HMMPfam Thioredoxin domain 4e-13
    ProfileScan Tetratricopeptide repeat 9.411
    ProfileScan Tetratricopeptide repeat 6.254
    ProfileScan Tetratricopeptide repeat 5.782
    ProfileScan Tetratricopeptide repeat 6.726
    ProfileScan Tetratricopeptide repeat 7.257
    ProfileScan Tetratricopeptide repeat-containing 18.356
    ProfileScan FAS1 domain 8.385
    HMMPanther DNAJ-RELATED 1.3e-109
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 1.3e-109
    HMMPanther Thioredoxin, core 1.2e-13
    Gene3D Tetratricopeptide-like helical 2.2e-21
    Gene3D Tetratricopeptide-like helical 5.2e-23
    Gene3D Thioredoxin fold 8.6e-18

    See the detailed result >

    AT1G53300.1

    Model type
    Protein coding
    Short Description
    tetratricopetide-repeat thioredoxin-like 1
    Computational Description
    tetratricopetide-repeat thioredoxin-like 1 (TTL1); FUNCTIONS IN: binding; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: tetratricopetide-repeat thioredoxin-like 2 (TAIR:AT3G14950.1); Has 32097 Blast hits to 15852 proteins in 1300 species: Archae - 552; Bacteria - 6287; Metazoa - 8110; Fungi - 3609; Plants - 2668; Viruses - 128; Other Eukaryotes - 10743 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR