K27530

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27530

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27530

Determination of introduced cDNA(s)

  • J033000M22 - Rice Full-length cDNAs - Original: J033000M22

    full reading [+] show sequence

    Nucleotide sequence: J033000M22 - full reading 
    GTCACCCGCA CCCCGGCGCG CCGCTCGCCG CGCGCCCGCT CTCCGCGCTC 
    GCCTCCTTCT TCCTCGCCCG GCCCTCCTCC ACCGCCGCCG CGCCTCCTCC 
    TCGGCACGTC ACCCTCTCGT GCTCGCGGCC GCACTGCAAC CACAACCAGT 
    GGGCCGCCAG CCGGTGCCGC GGGACGGCGG GCCGGCGGCG GCTGCAGGTC 
    GTCGTGGCGA TGTCCTCGTC GGCGCCGCCG CCGCCTCCGG GATCCGTGCA 
    GAAGTCGGAG GAGGAGTGGG AGGCCATCCT CTCGCCGGAG CAGTTCCGCA 
    TCCTCCGCCT CAAGGGCACG GAGTATCCTG GAACAGGTGA ATATGACAAG 
    CTCTTCGCTG AGGGTGTTTA TGAATGTGCT GGATGCGGGA CTCCATTGTA 
    CAAGTCATCT ACTAAATTCA ACTCAGGTTG TGGTTGGCCA GCATTCTATG 
    AAGGATTTCC CGGAGCCATC GCACGAACGC CTGATCCTGA TGGCAGGCGA 
    ATAGAGATCA CCTGTGCGGC TTGCGGAGGA CATTTAGGAC ATGTCTTCAA 
    AGGGGAGGGG TTCAACACGC CTACAGATGA GCGGCATTGT GTTAACAGTA 
    TCTCACTCAA GTTCATTCCA GCCTCAGAAG ATAGTAAGCT TTGAGCATGG 
    AAGTATAAGC CCGCAATAGA ACAGTCTGCG CAGTCATAGT AAACCTGTGA 
    TTATTAAAAA AGTATCGGAT TTTTCAGAAA GCAATTTATA CTCTGCGGTT 
    TGTCAATAAT GCGAAATACC AAGTCTGATG ATTGTC

    Gene models with high sequence identity

    1. AT4G21860.3 [+] show detail - methionine sulfoxide reductase B 2
      E-value: 4e-63; Score: 238.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Methionine sulphoxide reductase B 8.6e-49
    superfamily Mss4-like 1.4e-48
    HMMPfam Methionine sulphoxide reductase B 2.7e-51
    HMMPanther METHIONINE SULFOXIDE REDUCTASE 6.6e-54

    See the detailed result >

    AT4G21860.3

    Model type
    Protein coding
    Short Description
    methionine sulfoxide reductase B 2
    Computational Description
    methionine sulfoxide reductase B 2 (MSRB2); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B3 (TAIR:AT4G04800.1).
    Link
    InterPro Scan - TAIR