K27532

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27532

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27532

Determination of introduced cDNA(s)

  • J013126G20 - Rice Full-length cDNAs - Original: J013126G20

    full reading [+] show sequence

    Nucleotide sequence: J013126G20 - full reading 
    GGTCCTCTTG CGTTGGAGTT GGGACCAAAG CGAAGGGAAA GTGGAACAGC 
    GCTCGCGGGT TGCGCTTGCG CCGGCGAAGA AGCGCGGCGG ACGCCAGATA 
    AAGCCCTCCC TCCATTGACA TCAACATGGG TGACAATCTG ATGGATAAGG 
    TCAATGCCTT GGGTGAGCGG CTCAAGGTAA GTGGGGCAGA AGTTAGCCGG 
    AAGATGTCAG CTGGTGTCAG TAACATGAGT TTCAAGATGA AAGAATTCTT 
    CCAAGGCCAG AACATGGCGG ACAAGATAGT CGATGAGGCC ACGCTGGAGA 
    CCATGGATGC TCCTGATTGG GCCACCAATC TTGAGATATG TGATATGGTT 
    AACACTGGAA ATGTCAACAG CATTGAGCTG ATCCGTGCCA TCAAGAGACG 
    CATCATGTTG AAGAATCCAC GAGTGCAATA TCTTGCTCTT GTCCTCCTTG 
    AGACCGTTGT GAAAAACTGC GAGAAGGCTT TCTCTGAGAT TGCTGCTGAG 
    CGGGTCCTTG ATGAGATGGT AAAACTGATC GATGATCCAC AGACTGTAGT 
    CAACAACAGA AACAAGGCAC TTATGCTTAT TGAAGCATGG GGAGAGTCAG 
    GAGATGAGCT CCGCTACCTT CCGGTGTATG AAGAGACTTA CAAGAGCTTA 
    AGATCAAGGG GAATTCGCTT TCCTGGGCGT GATGATGAGA GAACTCCCCC 
    CGCACTAAAG ATGGCACTGT AGGGAAGCGA GCAGGTTCTG GTGCTGATGA 
    GTTGCTTCAG GATCTTGACG ACATGATATT TGGCAAGAAG GGCGGCACCT 
    CATCTCAGCA GGACAGGAAG GAACAAAAGG ACGATTTCAT CAGTTTCTGA 
    CCACCAGATC CAGATACAGC AGGGCCGCAG GGAGACACTT GATATGGATT 
    TGTGTGATAT GCCCATCTTG CTTGAATGCA TCCCAGGGAT TTTGTTTGGT 
    TTAATGTCTT GGGCATGACT AGTTTCTTGC TGTACAGGAA TAGATAGATG 
    TAGCAGTCCC CCTTACTGTG TCAAGCCAGT CAGATTTTGG CTCATGACTA 
    CTATCAGTGT CAGAGGTTTC ATTACTTGCT GTACGCTCGG TGAAGGGTTT 
    GATGCTGAGT TTTTTTATGG TACATTCTAC TGCTAGTATA TACTACCAGT 
    ATATTTGATT TGACGGTGT

    Gene models with high sequence identity

    1. AT5G16880.3 [+] show detail - Target of Myb protein 1
      E-value: 4e-83; Score: 305.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily ENTH/VHS 4.7e-43
    HMMSmart VHS subgroup 4.9e-28
    HMMPanther TARGET OF MYB1 RELATED (TOM1 - RELATED), PLAN 1.8e-46
    HMMPanther VHS DOMAIN CONTAINING PROTEIN FAMILY 1.8e-46
    Gene3D ENTH/VHS 3.1e-35
    HMMPfam VHS 3.2e-25
    ProfileScan VHS 36.294

    See the detailed result >

    AT5G16880.3

    Model type
    Protein coding
    Short Description
    Target of Myb protein 1
    Computational Description
    Target of Myb protein 1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT1G06210.1); Has 1482 Blast hits to 1482 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 785; Fungi - 378; Plants - 250; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR