K27549

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27549

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27549

Determination of introduced cDNA(s)

J013154C12 - Rice Full-length cDNAs - Original: J013154C12

full reading [+] show sequence

GAACGAAACT CTATCCCCTC TCTTCTTCTC TCCGCTCCGC GTGTCCACTC 
CTCTCCCAAT CTGTGTTGGC TGCCATCCTA TGCACCTACC TACACCTCCC 
TGCCGACCAA CAACCCTGAG CAGGCGAGCT CCCCCACGGC CGCTGAGGGC 
CACGCGGCGA CGCCTCGTGC CCGGTGGCCG TGCACTGCAG CGCTAGTGCG 
GTTTTGCCTC CCCAGCGCCT ACGTCTACAC CGCGCCGCGC ACCCCACGGC 
CCTGCCGCCA TGCTCCTGCA TCTCCGCCTC CCTTCCTAGT TCCTACATGT 
TTCACTACTT AGCTGTGTTG CCAAATCACA CTCGGGCCTA ATTCCATTTC 
AGCACTATAC TACATTACTA ATTTGATATA TATGTTCTGT ATGCAGGTTT 
TGGATCAGAT GCAGTGATGA ATCCTAGGTG ACAGAGCCTA TTAGGCTAGA 
ACAGACCAAT ATGGCAAGGA GTAGAAGGCG GTGCATTGTT CAAAGCCATG 
AGGAATATTT GTCAGAGGAA CACATTGCAG AAGAAAATGC CCCTAAACAG 
CTTGCCACAC CATCTGAACA AGAAACAATA TGTAGTGATG TTCAAGAGGG 
TAATGAAGAT ACTAATGACG ATGTTGGAGA AGCCAATGAA GATACTGATG 
ACGATGCTAG TATGAATGCT GGAGAAGGCA ATGAAGAATC TGATGATGAT 
GTTGAAATTA ATGTTCGAGA TGAAAATGGA ACAATTGAAA CACGTGGGAA 
GACAAAACTG AAAGATATTT GGAACCTTCC GAAAAGGCTT AGGATTGTGG 
TTCAGTGCAA TGATCTCAAC CAGGCAGTAG GAGATGAAGC TGGAATTTTG 
TCTAAATTTC TTGGAATGGT AGCTAGGAAT GGTACTTTGT GTAGCTTAAG 
CTACACAGAC TGGAGATTTC TAATAGGAAA GAGAGAGAGA AAAACAAAAT 
CCCTAGATGA GTTTCTTTGT TGGTATCCAG ATGAGATTCC TTTATGCTCC 
TCGGATGGAA GAATTCATAT TAAAAACAAT TAGAGAGAGA TGGAGGGGAC 
ATAAAGCAAA ACTAAAAGAA AAGTATTTTG ATGTGAATAA GAGCAAAGAA 
GCTAATTGCA ACAATGTCCC AGCTGATGTG CTTCCTGACC AGTGGATTGC 
TCTTATCAAT CATTGGATGA GCGAGAAATC GAAGAAAATA AGCAAGCAGA 
ACAAGGAAAA TTGTCGAAAG AAGAAGGCAT TACACACAGC AGGGACAAAT 
AGTTTTGCTC GTACAAGAGA AGAGATGAGA CAAAAAGATC CTGCAAAGAA 
TCCTCACAGA GCTATTGTGT ACATCCAAAC ACACAAGCGC AAAACTGGCA 
AGAATCTAAA TGGGCATGTG GATAATTTGA AGAAACTTGT AGTTGAACAA 
CCAGCTTTAG CAGACACTAG TGAAGGAAGG ACTGCTTGGA AAGGAGATGC 
ATTGAACCAA ATACTTGGAG ATGACAAGCC TGGGCATGTG CATGGTCTTG 
GACTAGTTCC AAAGCCTAAA CAAGTTCTCG ATGTGCCAAA TTCCTGACGC 
TTAAAGAATA TAAATGTTAC TAGACTGGAT GATAACTGGA GTGAAGATGT 
TGTGGCTGCT AGACTGCAGT TGGAAAAGAT CGAAAATCAT GTCCAGAATC 
ATGATGCTGA GCTTTTGGAA TTGAAAGCGA AGACAAACAA GTTGGAAAAA 
GAACAAATGA ATCAGGGAGG TTTAGATCGA GTATCTACAA ACAAAGAAGC 
TAGTGTTGAT GGCCCTATTT CGAAAAGGAG GAGAGTGTAT TCTGACCATC 
CCTTGCAAGA AATTTGTATT GCTGAGGAGG AAAACGATAT GGTTCAGGAG 
GAAAACAATA TGATGAATAT ACAGAGCCAT GTTCCAAATG AGGATTTGCA 
ACCAAAAACC AAGCAATGTG TTGAAGACAA GAACAAACAA AATTGGGAAC 
AACATGACTA TGGGAAACAA AGGAAGGTTA TTTCTGCACA GAAAAAAAAA 
ACTAACAAGG AAAACCATGT GATGAATGCA CGAAAAGTTG TTGAAGCATC 
CAAG

Gene models with high sequence identity

AT1G40087.1 [+] show detail - Plant transposase (Ptta/En/Spm family)
E-value: 2e-18; Score: 46.60

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Transposase_24	5.09999999999998e-24
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT1G40087.1

Model type: Protein coding
Short Description: Plant transposase (Ptta/En/Spm family)
Computational Description: Plant transposase (Ptta/En/Spm family); CONTAINS InterPro DOMAIN/s: Transposase, Ptta/En/Spm, plant (InterPro:IPR004252); BEST Arabidopsis thaliana protein match is: Plant transposase (Ptta/En/Spm family) (TAIR:AT3G30200.1); Has 227 Blast hits to 225 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR