K27551

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased width (PATO:0000599) (Cauline leaf::Shape::narrow)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short) abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27551

Determination of introduced cDNA(s)

J023050A04 - Rice Full-length cDNAs - Original: J023050A04

full reading [+] show sequence

GCTTCCCCTT CGCATTTGGC TTCCCCCTTC CTTCCTCACC CCAATGCCTC 
CTCTCCCCTT CTTCCCTCTC CTCTGCCCCC CACGCTCCCA CGTCACTGCC 
AGGTAGGCCC CACCATGCAC CAGCTTCCTT CCCCCGCCCC CTCCTCCGCC 
TCCTCCTCGC CGTCGACGAC GACGGCGACG ACCACGTCGC TCGTGTCGCG 
CGCCCGCACC GCGATCCACT CCGCCGCCGC CCGCGTCCTC ACCGACATCA 
AGGCCGACCT CCGAGATGCG GACGGATCCG GGGCGCTCAG GGCGCCGTCC 
CCGCGGCCAT CGGCGGATCG GCACCCCGAC TCCATCGCCG CCGTCGTGGG 
TTCGCCGCGA GACGAGGCCC CAGATATAAT CTCCTCCCCA GATGGGGATA 
CCTCAAATAT TGAACCTGAC TCAACTTCTT CAACAAAGAT GGCCTTTCCT 
TCAGTTTCAG TGGTTAAGCA GCTGGTTGCT GCCATTGACA ACGGTAAAAA 
TTTCAAGTCA ATGAATGATA TGAGGTCTAA TGGAGACCAA TTACTGAAAG 
AGAAGGGGGG CTTGAGCTTA TCTGTTGTCA AATCACTTGT TCGGCGTGAA 
AAGGATGAAA GATCGAGTTC TGAATTTGTT GGCGATGATG AAACACAATC 
TTTGATGTAC ACATTGTTCA AATTAGAGGA GCATTTTCCC CATGACAAAA 
GTCAATGCAA CTCAGAGTTG CATCACTCAA TATCTTTGCC CAAGGATCTA 
CACGGTGCAC CACCTGGAAG TTTCACTCAT CAAATAGCAG AGACTATTGG 
CAAAATAAGT TCTGTATACA AAATGGCGTT CTTTTGGCAA TCCCTAGTTC 
TCGAGTTGAA GAAACTATGG TCCGATGGGC AACCGGTGCC TCGAATGCCA 
CTGGATGCTG CTCCAGACTT GAATTGTTGT TTACTGCATC AAGAGATACA 
AGTTATAAAT TGCTGCATTG CCAGGAAAAA ACGGAGAAAA GCCGCCAAGG 
AATCACTGGA TTCATTGTTA AAACGTGCAA GTATTGATAA CTCCAATCAC 
TTGTATTCAA ATGGGGACTC TCCTGACAGC GAGATGTATA TAAAAGGTAG 
TGCTGGTGAC AATGTTCTTC GGCTTGGTGC TGATCATCCA TCAGAGAACT 
TAACGTTGTT GGAAACTGGT GAGCTCGTAT ATTCTCCAAC TCTGCAGGAA 
GGTCCCATTA TGACAGCAGA GCTTATAAAA GAAACAGAAG AACTTGTCTT 
AAGGACTGGA AGTGTTGGTG CTGGGTGTTC TCAACTTCTA TCAGATATGC 
AAGCCTTCAA GGCCGCAAAT CCAGGGTGTG TCCTGGAAGA CTTCATTAGA 
TGGCACTCTC CACCTGATTG GTCTGAAGAT TGTGCAGCAA GCAGCGCAGA 
AGTTGGGGAG GGCTCATCTA GACGAGGTCG ATTAAGTGAG AGAATGCAAA 
CAAAAGAAGG GAACTTGTGG AAGGAATTAT GGGGGGCTGC AAAACCAATA 
CCTGCTGTTG AACAGGCGCC TATATATGAT GAAGATTTAG CTGTGGAGAG 
CATTTTTGAT GCCTTGGAAG TTATTGAACC GTCAAAACTT TTTGAGCAGC 
TACTAGCTGT CATTCTTTCT GTATGCTTTG TAGCAGCAGA ATTGGTGCTA 
CCAGCAGGTA GCAACTTGTC GAAATTATTC TACGACTGTA AAGATTACAT 
ACTCAGCATT TACCAAGATG ACATATCAAA AGAGAAGCTA GATGAGATAT 
GCAAGGTCTA CGAGACGATG GAAGCCATAG TAACTCACCC TGAAGAAACT 
CTTCAGATAA TGGAGGCACC TGATGAAAAG TCCCCCCTTG AGAGTAAAAA 
CCGGTTCAAG ATCAAGCTCA ACTTTATCGG CAAAGATCGC CATCCACTGT 
GGAAGCGTGC ACCAAAGGAG GAGAAAAAAT CATCACCGAA AGACGAGAAA 
AGATCGTCAG AGGAAAGGAG CACGAAAATT TTCTCAAACC TTCTTGACAA 
GAAGGTTTCC ATATTCTCCA AGAAGAATGC AAAACCAACA ACAGAGGTAC 
CGCCACCACC TCCCCCTTCA TCTGCCCCTG GACCATTCGA TGATAGTGAG 
TGGACGATTT TGTAGATGCA AATCGTGGAT GTTTCCTTTG TACAATTTGT 
AGAGTGGTGC CACAAGATGT CGGGAATAAG CTCAAGCTGT AAATACTCCA 
TCCAATTCAT TAACCAATCT GAAATAAAAT GAAAAAAAAA GAGATGAAGA 
TTTTACCTAA CC

Gene models with high sequence identity

AT5G55060.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
E-value: 3e-122; Score: 436.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SUBFAMILY NOT NAMED	7.8e-143
HMMPanther	FAMILY NOT NAMED	7.8e-143

See the detailed result >

AT5G55060.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
Link: InterPro Scan - TAIR