K27602

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27602

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27602

Determination of introduced cDNA(s)

  • J033068E01 - Rice Full-length cDNAs - Original: J033068E01

    full reading [+] show sequence

    Nucleotide sequence: J033068E01 - full reading
    GTATAGGCGA GGCGAGGAGA GGAGGCGACG GCCGCGAGCG CGAGGCGAGG 
    CTTCCGACTC GAGCAAGGAG ATCCCACTGC TCCAACCAGA TCAGGTGATG
    GGTGGGGAAT CTACAGGAAA CACGACCTCC ATTCCCCAAT GGGAGAAGCC
    ACTGTTCCCC TCAGTATCCA TGTTACTCTG AGCTACTGAG CTCTCTGCTA
    AGTTGGTGCC TCAGCTGTGT ATCTTGCAGC AAGAGTGTTC TAGCCTTCTA
    GGCTGCCAAG ATGAAGTCCA ATGCGGTTAC CTCCAAAGGC AAGGCCGTGT
    TCGAGCTGAA GCACAGGCTG GTCCAGGCCA TCAACAAGAT TGCAGACAGG
    GACACCTACC AGATTGGATT GGATGAGCTT GAGAAGGCCG CTGACACCTT
    GCCTCCTGAC ATGGTTGGTC CCTTCTTGTC TTGCGTGGTT GACACCGATG
    CCGAGCAGAA GAGTGCGGTG AGGAAGGAGT GCATCAAGGT GATTGGCACA
    TTGGCTCGGT CCCATGGAAG CCTAGTGGCA CCTCACATGA CGAAGATGGT
    GACCAGCATT GTCAAGCGCC TCAAGGATGC TGACTCTGTT GTGAGGGACG
    CCTGTGTTGA TACCTGTGGT ACCCTCGCAT TGTGTGCTAG AGGCTATGGG
    GATGGTGGCG CTGCATTGGT TGCGTTGGTG CGGCCCTTGT TTGAATCACT
    TGGTGAGCAG AATAGGTATG TTCAGGCTGG GGCAGCGTCT TGCTTGGCCA
    AGGTTATTGA CGAGAGCAAT TACTTCCCTG GCCCTGTTCT GCCGCAGATG
    CTTGTTCGTG TTGTTAAACT GCTCAAGAAT CCCCATTTCA TGGCAAAGCC
    TGCAGTGATT GAGTTGATCA GAAGTATTAT TCAGGCTGAA GGTGCTTCTA
    CAGAGCAGTC TTTAACATCT GCTCTAACAA GTATTATGGA TGCCCTGAAG
    AGTAGTGATT GGACTACAAG GAAAGCAGCT TCAATAGCTC TATCTAGTAT
    TGCTCTCAGT TCTGGATATC TGGTTGCCTC CTTTAGAACT TCCTGCCTTC
    GCTCCCTTGA ACGTTCTAAA TTTGACAAGG TCAAACCAGT GCGTGATGCA
    ATTACCCAAG CCATTCAGTT GTGGAAGGTT ATTCCAGGGT CTGATACTCC
    CGAGCCATCA GAAGCTGGAT CATCCACAAA AGAAAACTTC TTTGGTGACC
    ATCATGATGG TAGAAGTATA AATGATGGTG GATCACGAGA CACTTCTTTC
    AGGAGAGTTG ATCCTGCATC TTCTGTTTCT GCAATCAGTG GCAATTCTAT
    TACTTCATCA AAGAAGAGAT CTCCTCTGTC TATCAATAAA ATAGCCCTGA
    ATAATGCTGC AAATCAGCAA CGCTCGAAGT TGAGCGATTG GCATGTTGAG
    ATATCTGTTC CTAAGCAGAA TATGATACCA TTAGTTGATT TTGAAGAAAA
    GGTGTCTGGC AATGGTTCCA TGCTAAAGGG TTCAAATAGA AGTCCATATG
    AAATCGTAGA CAATGACAGC AAGTATGAGT ATGACCCCAT GGATGATAAA
    CAAGATTGCT CCTCTATGTC AGAAGTAGCC AGCAGGAGTT GTGAGACAAA
    GCATGTCACT TCTGCTCAGG AATGCGTTGA GGATTGTGAT TCTGCAAGAG
    ACATTGAGCA ATTCCCCAGG GCTCAAAAGA GTAAGAGCAT AGACTCCACT
    GTTACAGATA TCACTTCACA TGGGACACAT ACTTGCTGTT TGGGTGCAAT
    GAAAGAACTA TCTCATATCA GGAAGCAGCT TCAAGAGATG GAGAGGAAGC
    AAGCAAATAT CTTTGATATG TTGCAGGAAT TCATGTCTAA CTCAGTGGAG
    AACATGTCAG TATTAAGCAT GAAAGTGCAT AATTTGGAGA ATGCTGTAGA
    CAAAACTGTG TATACAATTA CTCAAAGTGA AAGCCGCTAT CACCTTCCTG
    GTTCCAAGTT TATTAAGAAC CAAAGTGCCA CTTCTTCACC GAGGGTTTCT
    ACTTCTACAC CTAGATCATC TGTGGATGCT AACTATAAGC CACCACCAAT
    TCCTCATTTG AAACAAGAGA AAAAGTGGAT GCAAGATCAA CCATCAAAGG
    GCTTAAACAT GGGTGTAAAA GAGGGGGAAT TTCTAAAGAG TCATACTCAT
    GACAAAACTA GAAAGCCTGG GGTTGTGAGA TCGGAAAGTG CTCTGGGAAG
    ATATGTTCCA AGCTCAGCAA GGACTCGAGC ATCAGGGGTT AAGGGAAACT
    TTCCAGTTTC ACTTACCAAT TCCTGTGAGC AGCCTGAGCT GCAAAATGCA
    TTGCGTGCTT CTAAAGAATT TGATGGTAAT GATGACATGG CGTCTGCATA
    TGTAGAAGCC CTGAACAGTG GTGACTGTGA TTATCTGATT GACGTAATGG
    ATAGAACTGG ACCTGTTCTT GAGAAATTGT CACGTGAAAC AACAAGTGAA
    CTTTTGAGGG TTATAGCTGG CCAGTTTCTG AATAAAAAAA TGTTTGATTT
    GGCATTGCCT TGGCTTCAAC AGGTAGCGGA TTTGAGCATG ATTTATAAGC
    CAAGTCAACT TTTTGTGTCT GTGAGAGCAC AGAAGGAGTT CCTTGCTTTA
    TTGGAGGAAG CTGCAACAAG TGGATCTACA GAGCCAGCAA TCAGAATTGC
    CATTGCACAG CTTGCATTTA AACTGACAAA AGTCTGTGAG GTTGCACCAT
    GCAGGAAAGT TTTGAGTAGA GTGTGCAGAG GAAATGAAAC TATCATGGCC
    ACTGCGATGT GAAATACTTC CCCTAGCAAT GTACCCCCTA GTGTATGTTC
    AAACTTCAAT GTCATGCTGC AGTGATTGAG TGCACCCATT TCATTTTGTT
    GTAGCCCTGT AATCTGTGTG ACAATGTATA CTCGGTTTGG GTACTATGTG
    CAAGACTAGA TGAGTTCTGC AAATTCATCT ATAGTTTGCT AGTTAAGCTT
    GGATCTTCTG TTGCTAGGAA ACGGCTGTTT TTAGCTGTGT TGTGAGATTT
    GGTCTCATAA GTAGTGATCA TTGAGCTTGT GAATTC

    Gene models with high sequence identity

    1. AT2G07170.1 [+] show detail - ARM repeat superfamily protein
      E-value: 3e-135; Score: 480.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 1.4e-29
    Coil coiled-coil 0
    Gene3D Armadillo-like helical 0.0000018

    See the detailed result >

    AT2G07170.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G27210.1); Has 437 Blast hits to 391 proteins in 95 species: Archae - 6; Bacteria - 71; Metazoa - 26; Fungi - 88; Plants - 186; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR