K27650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27650

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27650

Determination of introduced cDNA(s)

  • J023095C13 - Rice Full-length cDNAs - Original: J023095C13

    full reading [+] show sequence

    Nucleotide sequence: J023095C13 - full reading 
    GAGGTGAGCT CTCTCGTCTC GCCTCGTCTT CTTCTTGCTC AGGGCAGATA 
    GAAATGGCGG CGGAGACGTT CCTCTTCACC TCCGAGTCCG TGAACGAGGG 
    TCACCCGGAC AAGCTGTGCG ACCAGGTGTC GGACGCGGTG CTCGACGCGT 
    GCCTCGCCCA GGACCCCGAC AGCAAGGTGG CGTGCGAGAC GTGCACCAAG 
    ACCAACATGG TGATGGTGTT CGGCGAGATC ACCACCAAGG CCACCGTCGA 
    CTACGAGAAG ATCGTCCGCG ACACCTGCCG CGGCATCGGC TTCGTGTCCG 
    ACGACGTCGG CCTCGACGCC GACCGCTGCA AGGTGCTCGT CAACATCGAG 
    CAGCAGTCGC CCGACATCGC GCAGGGGGTG CACGGCCACT TCACCAAGCG 
    CCCCGAGGAG ATCGGCGCCG GCGACCAGGG CCACATGTTC GGCTACGCCA 
    CCGACGAGAC CCCCGAGCTG ATGCCCCTCA GCCACGTCCT CGCCACCAAG 
    CTCGGCGCCC GCCTCACCGA GGTCCGCAAG AACGGCACCT GCGCCTGGCT 
    CAGGCCCGAC GGCAAGACCC AGGTCACCGT TGAGTACCTC AACGACGCCG 
    GCGCCATGGT CCCCGTCCGC GTCCACACCG TCCTCATCTC CACCCTGCAC 
    GACGAGACCG TCACCAACGA CGAGATCGCC GCCGACCTCA AGGAGCACGT 
    CATCAAGCCG GTCATCCCCG ACAAGTACCT CGATCCGATC CGTTACCTGA 
    TTTTCTTCCG GGATTGATGT GTGTTGTTGG CTTGAAACTA TGCCTGATCT 
    CAGTGATGTT GTTGTCAGCT TTAGCTTTGG TATGCAGGAT GTTACCTCGT 
    TGTGAACTTG TGAGGAGTTC GTTCATCTCT ATTGCCTGGG TCTACATTTC 
    G

    Gene models with high sequence identity

    1. AT1G02500.2 [+] show detail - S-adenosylmethionine synthetase 1
      E-value: 7e-124; Score: 440.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan S-adenosylmethionine synthetase 0
    Gene3D no description 1.7e-44
    Gene3D no description 3.7e-28
    superfamily S-adenosylmethionine synthetase 2.9e-45
    superfamily S-adenosylmethionine synthetase 3.6e-40
    HMMPfam S-adenosylmethionine synthetase 4.1e-43
    HMMPfam S-adenosylmethionine synthetase 1.2e-42
    HMMPanther S-adenosylmethionine synthetase 9.9e-151

    See the detailed result >

    AT1G02500.2

    Model type
    Protein coding
    Short Description
    S-adenosylmethionine synthetase 1
    Curator Summary
    encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity.
    Computational Description
    S-adenosylmethionine synthetase 1 (SAM1); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ethylene biosynthetic process, S-adenosylmethionine biosynthetic process; LOCATED IN: cell wall, plasma membrane, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 2 (TAIR:AT4G01850.2); Has 10905 Blast hits to 10897 proteins in 2898 species: Archae - 12; Bacteria - 5497; Metazoa - 373; Fungi - 167; Plants - 706; Viruses - 1; Other Eukaryotes - 4149 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR