K27708

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27708

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27708

Determination of introduced cDNA(s)

  • J033005C22 - Rice Full-length cDNAs - Original: J033005C22

    full reading [+] show sequence

    Nucleotide sequence: J033005C22 - full reading 
    GACTCTCCTC CCCCTCGTAT CGCTCGGGAG CGGAGGTCTC CTCGCCCCTA 
    GAGCGCCGCC GCCACCGCCA CCGCCGCGGC CGCCGCGGCG GGGACTTGCC 
    GGTGCCAAGT CCACACGCCA TCGTCGCTCG CACCCTTCCC GCGCAGGGAT 
    TTGTTCACGA TGGCCCGCTT GTATGTTGGC AACTTGGATC CCCGAGTGAC 
    TTCCGGGGAA CTTGAAGATG AGTTTCGTGT GTTTGGAGTT CTGCGAAGTG 
    TCTGGGTTGC CCGTAAACCA CCTGGTTTTG CATTTATCGA TTTTGATGAC 
    AAGAGGGATG CTGAGGATGC ACTCCGTGAT TTAGATGGCA AGAATGGATG 
    GAGAGTTGAG CTCTCACGGA ACTCAAGTAG CCGCGGAGGT CGTGATCGAC 
    ATGGTGGGTC TGAGATGAAG TGCTATGAGT GTGGTGAAAC TGGGCACTTT 
    GCTCGTGAAT GTCGTTTGCG TATTGGTCCT GGAGGTCTGG GTAGTGGAAA 
    GCGTCGTAGC AGGAGTCGCA GCCGCAGTCG CAGCCCTCAA TACCGCAAGA 
    GCCCGACCTA TGGTAGAAGA AGCTACAGTC CTCGTGATCG CTCTCCAAGG 
    CGCCGCAGTG TTTCACCAGT TCGTGGGCGC AGCTACAGCA GGTCACCACG 
    TGGCCGAGGT GGTTCTCCTT ATGCTGATGG AAGAGATGGT GGCAGGTACC 
    GCCGTAGCAG GAGCTAGACC CTGATGCCTG TGCTTGACCG TCTGCTCTTT 
    GGCTTGCATG TCATGAATGC TTTAAGACTG GCATCAACTG ATTGACTTCA 
    ATTAAGGTTT ACTACTTTAT CTGCCTTGAT ATTTCAGCCT CTTATTTCTG 
    ACGTTAAAAA ACTTATGGGA TGGATGTAAT ATGCAACTAA GACATATTAC 
    CTTTCTACT

    Gene models with high sequence identity

    1. AT4G31580.2 [+] show detail - serine/arginine-rich 22
      E-value: 9e-34; Score: 140.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 15.596
    ProfileScan Zinc finger, CCHC-type 10.823
    superfamily RNA-binding domain, RBD 1.6e-15
    HMMPanther ARGININE/SERINE-RICH SPLICING FACTOR 2.6e-29
    HMMPfam RNA recognition motif, RNP-1 3.4e-15
    HMMPfam Zinc finger, CCHC-type 3.5e-07
    Gene3D Nucleotide-binding, alpha-beta plait 6.4e-13
    HMMSmart RNA recognition motif, RNP-1 2.7e-16
    HMMSmart Zinc finger, CCHC-type 0.00011

    See the detailed result >

    AT4G31580.2

    Model type
    Protein coding
    Short Description
    serine/arginine-rich 22
    Curator Summary
    Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K.
    Computational Description
    serine/arginine-rich 22 (SRZ-22); FUNCTIONS IN: protein binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, nucleolus, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA recognition motif and CCHC-type zinc finger domains containing protein (TAIR:AT2G24590.1); Has 12597 Blast hits to 10987 proteins in 687 species: Archae - 4; Bacteria - 845; Metazoa - 6508; Fungi - 1364; Plants - 2624; Viruses - 137; Other Eukaryotes - 1115 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR