K27728

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27728

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27728

Determination of introduced cDNA(s)

  • J013121K01 - Rice Full-length cDNAs - Original: J013121K01

    full reading [+] show sequence

    Nucleotide sequence: J013121K01 - full reading 
    GGTACATCCA GGTCTTGACG GCATTCATCG CCGAAATCCC CAAATGGACA 
    CGGCGAGCTT GTGCACCGTG GAGAAGCGCG GCGCCGTCCA CGTCATCACC 
    CTCACCGGCG CCGGCGAGCA CCGCCTCGGC CCGCCCCTCC TGTCCGCGCT 
    CCGCTCCGCC GTCGCCGCCG TCCGCGCCGC CGCCGCCGCG GGCGCCGGCG 
    GCGCGCTGGT GATTGCCGGC GAGGGCAAGT ACTTCTCCAA CGGGTTCGAC 
    CTGGACTGGG CGCGCACCGT GCCCGCCGAG CTGCACGCCT CCATGGGCGG 
    CGCCTTCCGG GGCCTCGTCG CCGACCTCCT CGCTCTCCCG GTGCCCACCG 
    TCGCCGCCGT CACCGGCCAC GCCGCGGCCG CCGGGTGCGC GCTGGCGCTC 
    GCGCACGACG CCGTGGTCAT GCGCGCCTCC CGCGGCTTCC TGTACATGAG 
    CGAGGTGGAC GCCGGCCTCA AGATCGTCGA CTTCTTCGCC GAGCTGATCC 
    GGCAGAAGGT CCCCGACGCC GTGAACAGGA GGGATCTAGT CCTCCGGGGC 
    GACAAGATGA CGGCGGCCGA CGCCCTGCGG CGGGGCATCG TGGACGCGGC 
    CGTCGACGGC GGCGTCGACG ACGTGGTGGC CGCCGCCGTC CGGGAGGCGG 
    AGGCGCTCGC GGCGAGGGGA TGGGACGGGG AGATCGTGGC CGAGACCAGG 
    AAGGCGATTT GGCCGGAGCT CTGGGCCAAG GTGAAGGACC ACGCCACCGA 
    CGAGCCTCCG CCGCCGCCGC CACGGCCGCT GCTGTAGTCT ACCTTACCGT 
    ATGTTGTATC GTGTATGCTT CCGCTGCATC AAGATTGGTG CGCTGCAAAT 
    GTATCCTCGC AGGATTGCAT GATTTGTATC

    Gene models with high sequence identity

    1. AT4G14430.1 [+] show detail - indole-3-butyric acid response 10
      E-value: 5e-26; Score: 115.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily ClpP/crotonase 6.5e-30
    HMMPanther ENOYL-COA HYDRATASE-RELATED 4.6e-16
    HMMPfam Crotonase, core 4.5e-19
    Gene3D no description 1.9e-23

    See the detailed result >

    AT4G14430.1

    Model type
    Protein coding
    Short Description
    indole-3-butyric acid response 10
    Curator Summary
    Encodes a peroxisomal delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation. This enzyme might also be involved in the conversion of indole-3-butyric acid to indole-3-acetic acid via a beta-oxidation-like pathway.
    Computational Description
    indole-3-butyric acid response 10 (IBR10); FUNCTIONS IN: catalytic activity, dodecenoyl-CoA delta-isomerase activity; INVOLVED IN: fatty acid catabolic process, root hair elongation, metabolic process, indolebutyric acid metabolic process, response to indolebutyric acid stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: 3-hydroxyacyl-CoA dehydratase 1 (TAIR:AT4G14440.1); Has 14072 Blast hits to 14069 proteins in 1567 species: Archae - 245; Bacteria - 9896; Metazoa - 835; Fungi - 284; Plants - 269; Viruses - 0; Other Eukaryotes - 2543 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR